Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0472 ATGGTATTAGCGAGTGTAATTAACTCGAATGAAGTAGTTGGTTTCTCCCTTAATAAGATCTCGCGAGTGATGAGAACTAAGACTGTTGGCGGACATAGAAGGCGTGCGGTCTCTCCACCAACTCCTTCCCTCTCCGCCATTCCTCTCCTCTCCACCCAGGATGAGTACAATGGAACTATGTTTGAGACATCATCTGAGAGTGATCATAAACAACAAGAATACGAGTCTATAGATTTTTCGGACAATGATATGTGCATTTGTTGCTATCAAAGTGGAGGAGGGTTAGTTTGTAGTGAAAGGGGTTGTCCGGTTACTCTCCATGTAAACTGTCTCAACTCTGAACCTAAATTCGACGATTTCGGAAACTTCTATTGCCCCTATTGCTGGTACAATCGAGCGGTGGACAAGTGTCAAGAGTTGAGGGAAAAAGCCATGACAGCAAAGAAAGCTTTGTCAAGTTTTTTGGATAAAAATGTGGTTACGAGTGATGAAATAGCGCAGACCGATCGGGATTCTAAGAGGAAAGAGGCTGTTGCGGGAGATGGTGATAATAGGCATGATGGTGTTCACAGTCAGAATTTACAGGCTGAGCTAAATCAGCAAAGAAAATTGCATAATTCAGATATCGATCACGCTGATGCTAATGATGATGTTGGACCTTGTAGAGAAGAAGTACCTGTACATATTAAGGTGGTTCAGGATTCAATGAACTTGGAGAAATTTGACAAACCTGATACTTCTGAAACACGTGAAACCAGAAATACGGAACGGAAAGAAACCAAGGATTCAAGACATAATATGGAGGATGGATGTGAAAGAATTGTTGAGGCTGGAGAGGAAGTAGAACCTTTCGGTGCTTCCCGTTTGGGAATGTATGCTGGTGTACAATCACAAAATATTGCATGTGATAAAGGGACTGAAGAAAGTGTTGCAAATCTTGCAGAGAATAAGGGAGGGATTAAAGATAAAGGAAAACTGCCACAGGTAGAACAAAAGGTGTCTTCAACTGATAGTTCTATGAGTGAAGCTGATGATTCAGAGTTTGAGGCCATCTCATTGAAGAAGGGCCGTGTCAAACGGAAGGTTCAAGAGACAGCATATCCTCAGAAGGTTGCTCCTGTCAAGAAATCATTATTGCAGGAGCATAACACTGCAGAGAAAAATGCTAGTCATATAAACGAGGAAGTGACTAGCTCCAGATTAAGACAACAACGAAAGTCACCTAACTATGTTTGCAGAAGGACTCAGTCTTTTCTGGCCGGAAGGCGTAAGAAATTACGTTGGACAGTTGAAGAAGAAACAGCTCTGAAGGAAGGAGTTTTAAAGTTCTCAACAGAAAATGAGAAAATCCCCTGGAGGAAAATTTTAGAATTTGGTACTCGTGTATTTGATAAGACTCGTACTCCTGTTGATCTGAAGGATAAATGGAGGAACATTACTGCCAAGGAAGGATGTAAGTAG 1461 0.4162 MVLASVINSNEVVGFSLNKISRVMRTKTVGGHRRRAVSPPTPSLSAIPLLSTQDEYNGTMFETSSESDHKQQEYESIDFSDNDMCICCYQSGGGLVCSERGCPVTLHVNCLNSEPKFDDFGNFYCPYCWYNRAVDKCQELREKAMTAKKALSSFLDKNVVTSDEIAQTDRDSKRKEAVAGDGDNRHDGVHSQNLQAELNQQRKLHNSDIDHADANDDVGPCREEVPVHIKVVQDSMNLEKFDKPDTSETRETRNTERKETKDSRHNMEDGCERIVEAGEEVEPFGASRLGMYAGVQSQNIACDKGTEESVANLAENKGGIKDKGKLPQVEQKVSSTDSSMSEADDSEFEAISLKKGRVKRKVQETAYPQKVAPVKKSLLQEHNTAEKNASHINEEVTSSRLRQQRKSPNYVCRRTQSFLAGRRKKLRWTVEEETALKEGVLKFSTENEKIPWRKILEFGTRVFDKTRTPVDLKDKWRNITAKEGCK 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0472 486 SUPERFAMILY FYVE/PHD zinc finger 75 131 IPR011011 -
Lal18g0472 486 MobiDBLite consensus disorder prediction 235 267 - -
Lal18g0472 486 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 43 486 - -
Lal18g0472 486 Coils Coil 375 395 - -
Lal18g0472 486 Coils Coil 130 150 - -
Lal18g0472 486 ProSiteProfiles Myb-like domain profile. 420 480 IPR001005 -
Lal18g0472 486 Pfam Myb-like DNA-binding domain 426 479 IPR001005 -
Lal18g0472 486 CDD SANT_TRF 427 480 - -
Lal18g0472 486 SUPERFAMILY Homeodomain-like 422 480 IPR009057 -
Lal18g0472 486 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 171 IPR013083 -
Lal18g0472 486 Gene3D - 419 482 - -
Lal18g0472 486 SMART sant 424 482 IPR001005 -
Lal18g0472 486 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 43 486 - -
Lal18g0472 486 MobiDBLite consensus disorder prediction 166 190 - -
Lal18g0472 486 MobiDBLite consensus disorder prediction 385 407 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0472 425 481 Single Myb Histone (SMH) Gene Family AT3G49850 55.000 2.35e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0472 - - lang:109325681 659.062