Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0465 ATGTCTATTGTTCTTAGAAAAGCGTGGGAACTCTTCTTCACTTCACCAACTCCAACCCCATCATCATCATCATCATCGTCGAAATCAAACTTGAATTATTCCAAAAACTTATCTGAATTATGTTACTCTTCTTTTTGTTCAGATATAGGTGAATTGGAGCAGCTTCCATTTGACATATTGATGCAAATTTTGAAGCTTTTGGGTCCCAAAGAAGCAGCTAAGTTGAGCATCATTTGCAAGTCTTTGAGATTTTTGGTCAAAGATAATCGACTTTGGGTTTATTTCCTTCAGACCCATCACTCTCACCCATCATGGGATTCTCTCTTCTTTGCTGAAACCACCTTCATCTATGGCTTCCCTCTACCATCCCTCGTTGGCCAGAGGCCCCAGCTTTCATTCATGCAGATTTATGGCCAACGAGAACAAGTTCCCGGTGCTATTATCATTGATGGCGGTTCTGGGTATTGCAAATTTGGTTGGAGCAAATACGAGTGTCCATCGGGGCGATCAGCAACCTTTTTGGAATTTGGTAACATCGAGACGCCAATGTACACTAGACTTCGACATTTCTTCACAACTATTTATAACAGGATGCAGGTGAAGCCAAATACACAACCAGTTATTGTTTCTACACCAATATGCCATTATGAGGATACTGAAGCAGCCAAAGCATCAAGACAACAGCTTAAAGACGCAATTTATTCTGCCTTGTTTGACATGAATGTTCCTGTTGTTTGTGCTGTCAACCAGGCAACTCTAGCTCTGTATGCTGCGAAACGAATTTCCGGAATAGTTGTTAATATAGGCTTTCAAGTGACATCTGTAGTTCCAATACTAAATGGTAAAGTGATGCGCAAGTTTGGTGTAGAAGTTGTCGGACTTGGAGCACTCAAACTTACAGGATTTCTTAGGGAGAAGATGGAGCTAAACAACATAAGATTTGAATCCTTGTACACTGTTCGCACATTGAAAGAGAATCTCTGCTATGTTGCTCTTGACTATGAAGCTGAGCTATCAAAAGATACACAAGCATCATTTGAAGCTACAGGAGAAGGGTGGTTTACCCTTTCCAAAGAGAGGTTCCAAACAGGAGAGGTCTTATTTCAGCCACATCTTGCTGGAGTGCAAGCCACGGGTTTACACCAGACCATAGCTCGTTGTATGGACCGTTGCCATTCCGCAGAATTATCTGGCGACAGTGAATGGTACAAGACCGTAGTTCTGTGTGGAGGCACTGCATGTTTACCAGGTTTGACAGAAAGGTTAGAGAAGGAACTCCATGCCTTGCTTCCTTCGTATATGTCGAACGGAATTAGAGTCATACCTCCTCCATATGGTGCTGATACTCCATGGTTTGGAGCAAAGATTATTGGCAATGTGAGCACCTTTCCGGGTCCTGGGTGTATCACAAAAAAGCAGTTCCATCAGAAGTCTACTAGATTCAACCTTTTATGGTGA 1458 0.4232 MSIVLRKAWELFFTSPTPTPSSSSSSSKSNLNYSKNLSELCYSSFCSDIGELEQLPFDILMQILKLLGPKEAAKLSIICKSLRFLVKDNRLWVYFLQTHHSHPSWDSLFFAETTFIYGFPLPSLVGQRPQLSFMQIYGQREQVPGAIIIDGGSGYCKFGWSKYECPSGRSATFLEFGNIETPMYTRLRHFFTTIYNRMQVKPNTQPVIVSTPICHYEDTEAAKASRQQLKDAIYSALFDMNVPVVCAVNQATLALYAAKRISGIVVNIGFQVTSVVPILNGKVMRKFGVEVVGLGALKLTGFLREKMELNNIRFESLYTVRTLKENLCYVALDYEAELSKDTQASFEATGEGWFTLSKERFQTGEVLFQPHLAGVQATGLHQTIARCMDRCHSAELSGDSEWYKTVVLCGGTACLPGLTERLEKELHALLPSYMSNGIRVIPPPYGADTPWFGAKIIGNVSTFPGPGCITKKQFHQKSTRFNLLW 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0465 485 SUPERFAMILY F-box domain 50 107 IPR036047 GO:0005515
Lal18g0465 485 Gene3D - 147 477 - -
Lal18g0465 485 PANTHER MACRONUCLEAR ACTIN 97 469 - -
Lal18g0465 485 SUPERFAMILY Actin-like ATPase domain 260 476 IPR043129 -
Lal18g0465 485 SMART actin_3 144 484 IPR004000 -
Lal18g0465 485 Gene3D - 251 449 - -
Lal18g0465 485 Gene3D - 36 116 - -
Lal18g0465 485 ProSiteProfiles F-box domain profile. 49 95 IPR001810 GO:0005515
Lal18g0465 485 Gene3D Actin; Chain A, domain 4 294 377 - -
Lal18g0465 485 SMART fbox_2 55 95 IPR001810 GO:0005515
Lal18g0465 485 SUPERFAMILY Actin-like ATPase domain 145 266 IPR043129 -
Lal18g0465 485 Pfam Actin 192 477 IPR004000 -
Lal18g0465 485 Pfam F-box domain 53 93 IPR001810 GO:0005515
Lal18g0465 485 CDD NBD_sugar-kinase_HSP70_actin 147 291 - -
Lal18g0465 485 PANTHER ACTIN 97 469 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0465 Lal-Chr18 3848803 3855754 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0465 193 463 Cytoskeleton Gene Families AT3G12110 32.975 5.32e-40 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0465 K16616 - gmx:100791973 753.436