Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0445 ATGGCAGAAATGAAGGAAGAGAGTAAATCTAAGGAAGAAAGTGTGAAACTTTTTGTGGGTCAAGTACCAAAAAACATGACCGAAGATGAACTACTTCAAATGTTCAAAGAGTTTGTGTTGGTTCAACAAATTAACATTATCAAGGACAAAGTCACACGCGCCTCTAGAGGTTGTTGCTTCTTGATTTGTCCATCCAGAGAAGAGGCTGATAAGGCTGTTAATGCCTTTCATAATAAGAAAACGCTCCCAGGGGCTTCTAGTCCATTGCAAGTGAAGTATGCAGATGGCGAGTTGGAAAGACTAGAACATAAACTCTTCATCGGCATGCTTCCAAAGATTGTTTCTGAAGTTGAAGTCTCTGCACTTTTCTCCAATTATGGAACTATAAAGGATATACAGATTCTAAGAGGTTCTCAGCAAACAAGTAAAGTAGGTTGTGCGTTTTTGAAGTATGAAACCAAAGAACAGGCACTTACTGCTTTGGAGGCAATCAATGGAAAGCATAAAATGGAGTATTCTGGACCTTCATGCGGCATTCAGCCACAAAATCCTGTTGGCGAGGGATTCCTTGTACCAGTTTGGAAATCTAAGAACGGCATTGTTCTCTACATTGGTTTGTATAATACGTGTTCCTTGCCCAGGCTTTATTCATTAGACAGGGTCGAACTGGATCTCGGTTTGGAAATGGAAACACAATCTCTAGCTTGTGAGGCTTATTATATTTTTGCAATAGATGAGCCTAATCTGAATATATCTCAAATTCCACCAGCGCCTCAATGCCTCATTCATTCACAACCAATTGGATTAGGATTTACTAAAATATTACACATCATCTTGGCAATGGCGACTAATCTTCAAGGTTCAAGTGTTCCTTTGGTCGTAAAATGGGCTGATACTGAAAAGGAAAGACAAGCTCGAAAAGCTCAGAAAGCGCAGTCCCAAGCATCTAATGTGCCACATGCTGATTCTCAACATCCTTCATTATTTGGAGCCATGCCAATGGGTTATGTTCCTCCTTATAATGGATATGGTTATCAGGCTCCTGGGGGTTATGGGATGATGCCGTACCGCTTGCCGCCGATGCAAAATCAACCTGGTTTTCATAACATGATGCCTCACATGAATCAAGGAAATGCATTACGGCCTGATCTCAGCCCCAATATGAACCCGAGAAATTATCGTTTTCCTCCTGCAAGTTATGTTGGTTCTTACCCTGCTGTGCCCAGTGTACAACATCCAATGGCGTATCCTGGAGGAATGATTAGTCCAAGACCTATGAGTTGTTCTCCCGGCTCGGTTTCACCTGTAGGTGGAAATAGCATCTCTTCTACATCTTCAGGTGCTGGCAAACATTCCGGCGGTGGTCAAGTTGAAGGACCACCTGGTGCCAATTTATTTATTTATCACATACCTCAAGAATTTGGAGATGAAGATCTTGCAACTGCTTTTCAACCATTTGGTAGAGTTGTGAGTGCTAAAGTTTTTGTTGATAAAGCAACCTGTGTTAGCAAATGTTTTGGGTTTGTTAGTTATGATTCACCAGAAGCTGCTCAATCTGCCATTAGCATGATGAATGGATGCCAATTAGGAGGTAAGAAATTAAAGGTTCAGCTTAAGAAAGAAAACAAAGAGAGTAAGCCATATTGA 1647 0.4123 MAEMKEESKSKEESVKLFVGQVPKNMTEDELLQMFKEFVLVQQINIIKDKVTRASRGCCFLICPSREEADKAVNAFHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKIVSEVEVSALFSNYGTIKDIQILRGSQQTSKVGCAFLKYETKEQALTALEAINGKHKMEYSGPSCGIQPQNPVGEGFLVPVWKSKNGIVLYIGLYNTCSLPRLYSLDRVELDLGLEMETQSLACEAYYIFAIDEPNLNISQIPPAPQCLIHSQPIGLGFTKILHIILAMATNLQGSSVPLVVKWADTEKERQARKAQKAQSQASNVPHADSQHPSLFGAMPMGYVPPYNGYGYQAPGGYGMMPYRLPPMQNQPGFHNMMPHMNQGNALRPDLSPNMNPRNYRFPPASYVGSYPAVPSVQHPMAYPGGMISPRPMSCSPGSVSPVGGNSISSTSSGAGKHSGGGQVEGPPGANLFIYHIPQEFGDEDLATAFQPFGRVVSAKVFVDKATCVSKCFGFVSYDSPEAAQSAISMMNGCQLGGKKLKVQLKKENKESKPY 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0445 548 MobiDBLite consensus disorder prediction 427 456 - -
Lal18g0445 548 MobiDBLite consensus disorder prediction 427 451 - -
Lal18g0445 548 SMART rrm1_1 16 92 IPR000504 GO:0003723
Lal18g0445 548 SMART rrm1_1 464 537 IPR000504 GO:0003723
Lal18g0445 548 SMART rrm1_1 104 173 IPR000504 GO:0003723
Lal18g0445 548 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 184 IPR000504 GO:0003723
Lal18g0445 548 SUPERFAMILY RNA-binding domain, RBD 12 169 IPR035979 GO:0003676
Lal18g0445 548 Gene3D - 100 187 IPR012677 -
Lal18g0445 548 Gene3D - 2 99 IPR012677 -
Lal18g0445 548 PANTHER RNA BINDING PROTEIN 9 169 - -
Lal18g0445 548 PANTHER RNA BINDING PROTEIN 282 535 - -
Lal18g0445 548 CDD RRM3_CELF1-6 465 537 - -
Lal18g0445 548 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 167 IPR000504 GO:0003723
Lal18g0445 548 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 465 535 IPR000504 GO:0003723
Lal18g0445 548 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 81 IPR000504 GO:0003723
Lal18g0445 548 CDD RRM1_2_CELF1-6_like 16 92 - -
Lal18g0445 548 Gene3D - 440 547 IPR012677 -
Lal18g0445 548 MobiDBLite consensus disorder prediction 303 324 - -
Lal18g0445 548 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 96 IPR000504 GO:0003723
Lal18g0445 548 MobiDBLite consensus disorder prediction 309 323 - -
Lal18g0445 548 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 463 541 IPR000504 GO:0003723
Lal18g0445 548 PANTHER RNA-BINDING PROTEIN-DEFENSE RELATED 1-RELATED 9 169 - -
Lal18g0445 548 PANTHER RNA-BINDING PROTEIN-DEFENSE RELATED 1-RELATED 282 535 - -
Lal18g0445 548 SUPERFAMILY RNA-binding domain, RBD 447 546 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0445 Lal-Chr18 3684762 3690832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0445 456 548 Eukaryotic Initiation Factors Gene Family AT1G22760 34.409 1.71e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0445 K13207 - gmx:100813239 458.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0445 18 3684762 3690832 Lal18g0445 18 3684762 3690832 ECH
Lal5g0309 5 2720287 2725134 Lal18g0445 18 3684762 3690832 LSH
Lal18g0445 18 3684762 3690832 Lal13g1316 13 11997902 12004965 PCT
Lal13g1316 13 11997902 12004965 Lal18g0445 18 3684762 3690832 PCT