Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0413 ATGTCGAAGAGAAAGTTCGGTTTCGAAGGTTTCGGCATTAACCGTCAATCCACCTTCGATTTCGAACAATCTCAACCTCATCAACGACTCTACCTCCCTCCCTCTTCCCGTCACGGCGGCGCTCACGACAACCACGAAGATACCGACCTCGACAACATCGATTACGACGACACTAATAACAACGATGTTGCTGTTTGTGGTGGTGATGATGATGGTGAAATTGATCCCTTGGATGCATTCATGGAAGGGATTCACGAGGAGATGAAGGCGGCACCGCGGCCAAAGGAGAAAGAAAAGGTTGAAGATAGGTTTAAGGATGATGACGATGATGAAGATCCAATTGAGAGTTTTTTGAGAGCGAAGAAGGATTTAGGGTTGACGCTTGCTTCGGATGCGCTTCATGCAGGGTATGATTCAGATGAAGAGGTTTATGCTGCTGCTAAAGCTGTGGATGCTGGTTTAGTGGAATATGATTCTGATGATAATCCTATTGTTATTGATAAGAACAAAATTGAGCCTATTCTTGCTCTTGATCATAGTTCTATTCATTATGAACCTTTTAATAAGGATTTTTATGAGGAGACACCTTCAATCTCAGGCATGAGCGAGCAAGATGTAAATGAATATAGGAAAAGTTTGGCCATTCATGTATCGGGTTTTGATGTTCCTAAGTCAGTCAAGACATTTGAGGACTGTGGTTTCTCTACACAAATTATGGGTGCTATTAAAAAGCAAGGCTATGAGAAGCCCACATCTATACAATGCCAAGCTTTACCAGTTGTGCTTTCTGGTAGAGATATCATTGGTATAGCAAAAACTGGTTCTGGTAAAACTGCTGCTTTTGTGCTCCCTATGATTGTGCATATCATGGATCAGCCGGAACTTCGGATAGAGGAGGGTCCTATAGGAGTTATTTGTGCACCTACTAGAGAATTGGCACACCAGATATATCTGGAGGCCAAGAAATTTGCGAAGTCGTATGGTATACGTGTATCTGCTGTCTATGGTGGAATGTCAAAACTTGAGCAGTACAGAGAACTCAAGGCGGGCTGCGAGGTTGTTGTTGCTACCCCCGGCAGATTGATAGACATGTTAAAAATGAAGGCATTGACAATGACAAGAGCAACTTACCTGGTGCTTGATGAGGCTGATAGGATGTTTGATCTTGGATTTGAGCCACAAGTAAGGTCGATTGTTGGTCAAATTAGGCCAGATCGCCAAACTTTACTTTTCTCTGCAACAATGCCTCGTAAAGTTGAAAAGTTGGCCAGGGAAATCCTTACTGATCCTATTAGAGTAACAGTTGGGGAGGTGGGAATGGCAAATGAAGATATTACTCAAGTTGTTCATGTAATTCCTTCTGATTCGGAAAAATTGCCATGGCTTCTGGAGAAGCTGCCTGAAATGATTGATCAAGGTGATACCCTAGTATTCGCTTCCAAGAAAGCCACTGTAGATGAAGTCGAATCACAATTGGCTCTAAGAGGTTTTAAAGTTGCTTCCCTGCATGGTGATAAAGATCAAGCTTCTCGTATGGATATTTTGCAGAAGTTTAAATCTGGCACATACCATGTGCTTATTGCAACTGATGTTGCTGCTCGTGGTCTTGACATCAAGTCAATTAAGTCAGTGGTGAACTTTGATATTGCAAAAGATATGGACATGCATGTGCATCGCATTGGAAGAACAGGTCGTGCTGGTGACAAGGATGGGGTTGCTTACACACTTATAACTCAGAAAGAAGCACGATTTGCTGGTGAATTGGTTAATAGCTTAGTCGCTGCTGGTCAGAATGTGTCCGTGGAGTTGATGGATCTGGCTATGAAGGATGGGAGATTCAGGTCAAAACGTGATGCAAGAAAAGGAGGAGGGAAAAAAGGCAAAGGGAGAGGTGGTGGAGGTGGCAGCGGACGAGGTGTGCGTGGAGTTGATTTTGGCTTGGGTATTGGATATAATCCAGAGTCAAACAATGCTCCATCTAACCCAGTTCCAAGTCGATCTACCGCAGTAAATTCTCTGCGGTCAGGAGTTATGTCACAATTTAGGAATAACTTTGTTGCTGCCTCATCAACCACTCAAAGTCAAGGATTCACTAATAATGCTAGCATTCCTGCAAAGAGACCAGCACTCGCTGGCTTTGTATCTGGCGGATCAATTGGCGGGGATATAAATACTCATCAGAATACTTCTTCATTCAGTCCTGCTACACCCACAGTAAATTCCACTAGTCAAAACTCTGGAGTAAATTCTGGTCAGAATAGCACAAACAGTTCCAAACCTAGGGAAAGGAGAAGGGCATCAGGTTGGGATAGATAG 2316 0.4331 MSKRKFGFEGFGINRQSTFDFEQSQPHQRLYLPPSSRHGGAHDNHEDTDLDNIDYDDTNNNDVAVCGGDDDGEIDPLDAFMEGIHEEMKAAPRPKEKEKVEDRFKDDDDDEDPIESFLRAKKDLGLTLASDALHAGYDSDEEVYAAAKAVDAGLVEYDSDDNPIVIDKNKIEPILALDHSSIHYEPFNKDFYEETPSISGMSEQDVNEYRKSLAIHVSGFDVPKSVKTFEDCGFSTQIMGAIKKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELRIEEGPIGVICAPTRELAHQIYLEAKKFAKSYGIRVSAVYGGMSKLEQYRELKAGCEVVVATPGRLIDMLKMKALTMTRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPRKVEKLAREILTDPIRVTVGEVGMANEDITQVVHVIPSDSEKLPWLLEKLPEMIDQGDTLVFASKKATVDEVESQLALRGFKVASLHGDKDQASRMDILQKFKSGTYHVLIATDVAARGLDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLVAAGQNVSVELMDLAMKDGRFRSKRDARKGGGKKGKGRGGGGGSGRGVRGVDFGLGIGYNPESNNAPSNPVPSRSTAVNSLRSGVMSQFRNNFVAASSTTQSQGFTNNASIPAKRPALAGFVSGGSIGGDINTHQNTSSFSPATPTVNSTSQNSGVNSGQNSTNSSKPRERRRASGWDR 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0413 771 MobiDBLite consensus disorder prediction 653 670 - -
Lal18g0413 771 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 458 607 IPR001650 -
Lal18g0413 771 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 210 436 IPR027417 -
Lal18g0413 771 MobiDBLite consensus disorder prediction 15 55 - -
Lal18g0413 771 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 47 656 - -
Lal18g0413 771 SMART helicmild6 486 567 IPR001650 -
Lal18g0413 771 MobiDBLite consensus disorder prediction 721 757 - -
Lal18g0413 771 Pfam DEAD/DEAH box helicase 251 422 IPR011545 GO:0003676|GO:0005524
Lal18g0413 771 MobiDBLite consensus disorder prediction 89 111 - -
Lal18g0413 771 MobiDBLite consensus disorder prediction 89 104 - -
Lal18g0413 771 CDD SF2_C_DEAD 445 577 - -
Lal18g0413 771 MobiDBLite consensus disorder prediction 16 31 - -
Lal18g0413 771 MobiDBLite consensus disorder prediction 614 670 - -
Lal18g0413 771 Gene3D - 436 611 IPR027417 -
Lal18g0413 771 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 374 602 IPR027417 -
Lal18g0413 771 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 379 387 IPR000629 -
Lal18g0413 771 Gene3D - 190 435 IPR027417 -
Lal18g0413 771 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 258 433 IPR014001 -
Lal18g0413 771 Pfam Helicase conserved C-terminal domain 462 567 IPR001650 -
Lal18g0413 771 SMART ultradead3 246 448 IPR014001 -
Lal18g0413 771 MobiDBLite consensus disorder prediction 721 771 - -
Lal18g0413 771 CDD DEADc_DDX42 238 434 - -
Lal18g0413 771 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 227 255 IPR014014 GO:0003724
Lal18g0413 771 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 24 47 656 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0413 Lal-Chr18 3496453 3501576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0413 227 583 Eukaryotic Initiation Factors Gene Family AT3G13920 35.000 2.17e-62 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0413 K12835 - gmx:100814854 1249.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0413 18 3496453 3501576 Lal18g0413 18 3496453 3501576 ECH
Lal5g0227 5 1966138 1971000 Lal18g0413 18 3496453 3501576 LSH