Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0404 ATGGACGATTGTTGTGCCGTTTGCGCTGAGCCTTTGGAATGGGTTGCGTACGGACCCTGTTTGCACCGCGATGTTTGTTCCACCTGCGTCTCTCGCCTCCGTTTCATTTGCGACGATCGACGTTGCTGTATATGCAAAACCCAATGCGACGTCGTTTTCATTACCAAGGCTCTAGGAGATTATACAAGGATGATTAATGACTTTTCAGCCCTGCCATCTAACATTAGAGAGGGCAAGGTTGGATCATATTGGTACCATGAGGATACAAATGCATATTTTGATGATATGGATCATTACAAGATGATCAAGGCTATGTGCAGGCTTTCATGCAGTGTATGTGACAAGATGGAGGAGCAACCACATGATGCTTCAAGGCGGCGTGAAAGATTTAAGAATATAGGTCAGCTGAAAGGCCACTTATTCCACCGTCATAAGTTGCATATGTGCAGTTTATGTTTGGAGGGAAGGAAGATTAATTCTGAGGATATATTTATATGTGAGCAAAACCTATATACTAGAGCACAGTTGAATCAACACATAAGCACAGGTGACTCTGTGGTGGATGGCAGCGAGAGTGAGAGAGGCGGTTTTATGGGGCATCCTATGTGTGAATTCTGCAGAACCCCATTTTATGGGGACAATGAATTATACACACATATGTCTACAGAACATTATACATGTCATATATGCCAAAGAACTATTAGAAATATCCATTTCCGTCAACAGCACTTCTTATGTGAAGATGAGGCTTGTCTTGCCAAGAAGTTTGTTGTCTTTCAATCTGAAGCAGAGATGAAGATACCGACTAGCTTTCGATACAGACATGGTAATGAACAGAACCAACGTCGTGGAAGAGCTCGCACGTTCCGTCGTGATGTGTCTGAAAATCAACTTTCTATGGCCATTGAAGCCAGTTTGGAGACAGCTAATGCAGAGCAATTGTTTCATAATCCATCAACAAGTAGTGGTCAAATTGTTGATGATGATGGGAATGATGATGTTGATTCTATCATTCAGCCATTTGAATCATTGGCTACATCAGGTTCTGAACCATCTTCAAGATACCTCCAAGCATTGGGACACAGCTCAAGAGGTGCACCTCTGGAAGATTCTTCCTTTCCTCCGCTTGCCACTCCTTCCAGCAACGGCCAGCAAAGTTCCAAAAATGAGTTGGAGGGTTCATGCACTAACACTATGGCAGCGCGCTTGCGCCGTCGTGGTAACAAAAATGTTTCTGTTATTAATTCTGGTAATGCTTGGCCTGCTGCTGGTCGGGGACCGATAGAAACATCAAGTATCCCGACACAATCTAAACTGCCAACAAATGTTGTTCCTGGAGTGTCACCTAATTCTGGTCTGGTGAAGACAGTAATTAAAAATGGGGGTTATCCATCAACTTATGCTAGTTCTATTCAAGCTACACAGAGAACTGCACATGGACAATGGTCTGCTGGTTCATTGCAGGAAAAACGTGACAATGGTAGAATTGTTCACTCTACATCTGCTCCTAATCTAACTAAGAGCAACCCTAGTGAAGGTTCAATTTCTGATTTTCCTCCAATTTCTGCTGCACAAGTGAGCAAGTTACCTGCAAGCAGCCAACCCCTGTTGAATGTGGAGAATGTTCACTCTGCTAACAAGTCTTTGGTCGAAAAGATTCGTGGTGCTCTTGATTTTGATGAAGATAGATACACACTGTTTAAAGACATGTCTGCTCAATTTCGCCAAAGCACGATAGATACAGATACATATCTGGATTATGTGCAGCAGTTTGGCTTATCTCATCTTGTACTTGAGATGGCAAGACTGTGCCCAGATCCTCAGAAGCAGAAAGAACTTGTTGAATCCTACAACTTTAGTTTGCAAAGAAATGCTTTACGAGAAAACTGGAGGGCTCATGGTATCACTCACACCCTTGGCAAAGACAGTAATACCTCCAAAAAAGGCAAAGGTATGTCTGTAGAAGTTAGAGGGAGCAACTCTACAGAGAGGTTAGCAGATAGCTTTGTAAGCACTGTACATCAACTACAATCGAGTTATAAACCTTCAGAAGATAACTCAGAGGTACTATCAAAGGGTGATTACCGCACCAACAAAGGCAAATTAAAAATCGAGCAGCAGATCAATACAAATTCTGGTACTCAACCTATAAAGAAGCTAAGTGAGCAGAGTGAAACATCTGCTGGCAGTTTATCTAGTCAAAATAGAGAGGATGTGGGTGGTGGGAGAAAGCAACGCAAGAAAGCATCCAAGTTCCTTAAAGTGCGCCTTGGTGATGGTTCTGTTTCAGCACTTCTAGATCGTGAAAATACACACGCCGACTCAGATTTTGGAATAACAAATGGTTTAGATGGTGACAAGAATGACTCCGGAGGGTTGCCTGCGCGAGGTGTTTGGCGAAAAGGAGGTGCTCAGAGACTCTTTTCCTAA 2430 0.4296 MDDCCAVCAEPLEWVAYGPCLHRDVCSTCVSRLRFICDDRRCCICKTQCDVVFITKALGDYTRMINDFSALPSNIREGKVGSYWYHEDTNAYFDDMDHYKMIKAMCRLSCSVCDKMEEQPHDASRRRERFKNIGQLKGHLFHRHKLHMCSLCLEGRKINSEDIFICEQNLYTRAQLNQHISTGDSVVDGSESERGGFMGHPMCEFCRTPFYGDNELYTHMSTEHYTCHICQRTIRNIHFRQQHFLCEDEACLAKKFVVFQSEAEMKIPTSFRYRHGNEQNQRRGRARTFRRDVSENQLSMAIEASLETANAEQLFHNPSTSSGQIVDDDGNDDVDSIIQPFESLATSGSEPSSRYLQALGHSSRGAPLEDSSFPPLATPSSNGQQSSKNELEGSCTNTMAARLRRRGNKNVSVINSGNAWPAAGRGPIETSSIPTQSKLPTNVVPGVSPNSGLVKTVIKNGGYPSTYASSIQATQRTAHGQWSAGSLQEKRDNGRIVHSTSAPNLTKSNPSEGSISDFPPISAAQVSKLPASSQPLLNVENVHSANKSLVEKIRGALDFDEDRYTLFKDMSAQFRQSTIDTDTYLDYVQQFGLSHLVLEMARLCPDPQKQKELVESYNFSLQRNALRENWRAHGITHTLGKDSNTSKKGKGMSVEVRGSNSTERLADSFVSTVHQLQSSYKPSEDNSEVLSKGDYRTNKGKLKIEQQINTNSGTQPIKKLSEQSETSAGSLSSQNREDVGGGRKQRKKASKFLKVRLGDGSVSALLDRENTHADSDFGITNGLDGDKNDSGGLPARGVWRKGGAQRLFS 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0404 809 MobiDBLite consensus disorder prediction 316 336 - -
Lal18g0404 809 MobiDBLite consensus disorder prediction 272 292 - -
Lal18g0404 809 CDD RING-HC_ZNF598 5 46 IPR041888 -
Lal18g0404 809 MobiDBLite consensus disorder prediction 361 392 - -
Lal18g0404 809 MobiDBLite consensus disorder prediction 676 751 - -
Lal18g0404 809 ProSiteProfiles Zinc finger RING-type profile. 5 46 IPR001841 -
Lal18g0404 809 PANTHER EBR1 1 808 - -
Lal18g0404 809 MobiDBLite consensus disorder prediction 702 738 - -
Lal18g0404 809 MobiDBLite consensus disorder prediction 769 809 - -
Lal18g0404 809 PANTHER ZINC FINGER PROTEIN 598 1 808 IPR044288 GO:0061630|GO:0072344
Lal18g0404 809 MobiDBLite consensus disorder prediction 640 660 - -
Lal18g0404 809 MobiDBLite consensus disorder prediction 374 392 - -
Lal18g0404 809 MobiDBLite consensus disorder prediction 498 518 - -
Lal18g0404 809 MobiDBLite consensus disorder prediction 687 701 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0404 Lal-Chr18 3426077 3431250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0404 1 809 C2H2 Transcription Factor Family AT3G62240 48.674 0.0 751
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0404 K22381 - gmx:100799878 1206.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0404 18 3426077 3431250 Lal18g0404 18 3426077 3431250 ECH
Lal3g1404 3 19962715 19967768 Lal18g0404 18 3426077 3431250 LSH
Lal5g0214 5 1842893 1848708 Lal18g0404 18 3426077 3431250 LSH