Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0401 ATGAGTTGTTTCAGCTGTTGTGAAGAGGATGACTTGCATAAGACTGCTGCAAGTGGAGGACCATATGTGGCAAAAAACTCAGCAGGAAATGGTGGAAAATTTCAAGCTTCTGAAACTGCAAAGCAGGCTCAAACTGTTAAAATTCAGCCCATTGAAGTTCTTGAGATACCGCTGGATGAACTAAAAGAAATTACAGAAAATTTTGGAGATATTTCTCTGATTGGAGAGGGATCCTATGGAAGAGTATATTATGGTGTTCTTAAAAGTGGGCAGCATGCAGCAATCAAGAAGTTAGATGCCAGTAAACAGCCTGATGAGGAGTTTTTAGCCCAGGTTTCAATGGTTTCACGGCTTAAGCATGATAATTTTGTTCAATTGCTCGGTTACTGTGTTGATGGAACCTCCCGTATTCTTGCTTACGAGTTTGCATCTAATTGGTCTCTTCATAATATATTACACGGAAGAAAAGGTGTTAAAGGAGCACAGCCTGGTCCTGTTCTTACATGGGCACATAGAGTTAAAATTGCTGTAGGAGCTGCGAAAGGGCTTGAGTACTTACATGAGAGGGTTAATCCCCACATTATCCACCGGGACATCAAGTCAAGCAATGTATTAATCTTTGATGACGATGTCACTAAAATTGCAGATTTTGATTTGTCAAATCAGGCTCCTGACATGGCGGCACGTCTTCATTCCACCCGTGTCCTTGGAACCTTTGGTTATCATGCACCAGAATATGCGATGACTGGGCAGTTGAATGCTAAGAGCGATGTATACAGCTTTGGTGTTGTCCTTCTGGAACTTTTGACTGGAAGGAAGCCTGTTGATCACACACTACCACGCGGGCAGCAAAGCCTGGTTACTTGGGCTACACCAAAACTCAGTGAGGATAAAGTCAAGCAATGTGTAGATGTTAGACTAGGTGGAGAATACCCACCTAAAGCTGTTGCTAAGATGGCTGCTGTTGCTGCATTGTGCGTGCAATATGAAGCTGATTTCAGACCAAACATGAGCATTGTAGTAAAAGCACTTCAACCTTTGATGAATGCAAGACCTGGACCTGCTAATGAAACAACAAACTAA 1083 0.4247 MSCFSCCEEDDLHKTAASGGPYVAKNSAGNGGKFQASETAKQAQTVKIQPIEVLEIPLDELKEITENFGDISLIGEGSYGRVYYGVLKSGQHAAIKKLDASKQPDEEFLAQVSMVSRLKHDNFVQLLGYCVDGTSRILAYEFASNWSLHNILHGRKGVKGAQPGPVLTWAHRVKIAVGAAKGLEYLHERVNPHIIHRDIKSSNVLIFDDDVTKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVKQCVDVRLGGEYPPKAVAKMAAVAALCVQYEADFRPNMSIVVKALQPLMNARPGPANETTN 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0401 360 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 358 - -
Lal18g0401 360 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Lal18g0401 360 SUPERFAMILY Protein kinase-like (PK-like) 47 344 IPR011009 -
Lal18g0401 360 PIRSF ILK 12 352 - -
Lal18g0401 360 ProSitePatterns Protein kinases ATP-binding region signature. 74 97 IPR017441 GO:0005524
Lal18g0401 360 ProSiteProfiles Protein kinase domain profile. 68 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal18g0401 360 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 358 - -
Lal18g0401 360 Gene3D Transferase(Phosphotransferase) domain 1 144 356 - -
Lal18g0401 360 Pfam Protein tyrosine and serine/threonine kinase 73 344 IPR001245 GO:0004672|GO:0006468
Lal18g0401 360 SMART serkin_6 68 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal18g0401 360 Gene3D Phosphorylase Kinase; domain 1 29 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0401 Lal-Chr18 3399421 3404048 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0401 58 351 Receptor kinase-like Gene Family AT3G58690 49.662 2.38e-88 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Lal18g0401 PK_Tyr_Ser-Thr 4.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0401 K13436 - tcc:18613791 633.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0401 18 3399421 3404048 Lal18g0401 18 3399421 3404048 ECH
Lal3g1405 3 19970298 19974749 Lal18g0401 18 3399421 3404048 LSH
Lal18g0401 18 3399421 3404048 Lal13g0550 13 3582575 3588379 PCT
Lal18g0401 18 3399421 3404048 Lal24g0445 24 3129428 3135716 PCT
Lal13g0550 13 3582575 3588379 Lal18g0401 18 3399421 3404048 PCT
Lal24g0445 24 3129428 3135716 Lal18g0401 18 3399421 3404048 PCT