Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0398 GAAGGCAAAGATTGTGACACAATGAAGAGCAAAATAATCGCTTCTGCGGTTTCCCTCATTCTTGTGGTAGGTGTTGTCATTGGTGTTGTTGCCATTGTAAGCAAGGACAATGGCAATGGTACTAGTGATGGTCATCAATTGAATTCTCACAATAAGGCTATAACAGCTTTATGTAATGATGCTGATGATAAAAAACTTTGCCATGAAGTCCTTAAGCCTGTTAGTAACTCTTCAAACCCAAAGGAATATGTTGAAACTGTGGTGAAAACCACCATGGATAGTGTCATTAAGGCCTTTAACATGAGTGATAGGTTAACAGTTGAACATGGTAAAAGTAACCCTAGCCTTAAAATGGCTCTTGATGATTGCAAGGATTTGTTGCAATCTGCCATCCATGAACTTGAGGCTTCAGGTGTTTTTGTTCGTGATGGAAACATTCAAGATGTCCTCACACATTCAGCAGAACTAAAAAATTGGTTGGGTGCTGTAATTGCCTACCAACAATCTTGTCTTGATGGCTTTGATACAGAGGGAGAGAAGAAAATCCAAACACAATTACATACAGATAGTTTGGACAGTGTTGGAAAGCTTACTGGATTAGCTCTTGATGTTGTATCTGGGATTTCAAAAGTACTTTCTTCATTTAACCTCAACTTGAATTTGAAACCTGCCTCAAGAAGGCTTCTTGAGGTTGATCATGAAGGGTACCCTACATGGTTATCAGCTTCTGATCGTAAGCTTTTGGGTGCTAAGGTTGAAGGTGGTAATAATGGATTTATACCCCATGCAATAGTTGCCAAGGATGGAAGTGGAAAATATAAGAGTATTTTGGATGCTATTAACTCATACCCAAAGGGACACCAAGGTAGATATGTTATCTATGTTAAGGGGGGTATCTATGATGAGTACATCATTGTTGACAAGAAAAAGCCAAATATTTTGTTATATGGTGATGGCCCTTCAAAGACCATCATCACAGGTCGCAAAAACTTCCATGAGGGTGTTAAGACAATGAGAACTGCCACCTTTTCCACCGTTGCTGATGGTTTCATTGCCAAGGGAGTTACATTTGAGAACACCGCGGGTGCGATCGGCCACCAAGCAGTAGCACTCCGCGTGCAAGGTGATCAATCAGCTTTCTTCGATTGCGCAATTCGTGGTTACCAAGACACCCTATACGCACATGCTCATCGTCAATTCTACCGCAATTGTGAAATCTCTGGCACCATTGACTTCATTTTCGGCTATGCATCAGCCCTAATCCAAAACTCCAAGATCATAGTGAGGAAGCCAGATCCAAACCAATCAAACATTGTAGTAGCAGATGGCACAGACCAAAAGAACATGCCTACAGGAATAGTCCTTCAAAATTGTGAGATCCTCCCAGAGAGTGGACTACAAGCTGATAGGTTAACAATTAAGACTTACTTGGCTAGGCCATGGAAGGCATACTCTAGGGCAGTGTTCATTGAAAATGTTATTGGTGACCTAATCCACCCACTAGGCTATATTCCATGGGCTCCTGAACCCAACACACAATTCTCTTACTTTGCTGAGTTTGGTAACACTGGACCTGGTGCAAATACTCTTGGAAGGGCTAAGTTTGCCAAGGGACAAATTAATAAGCAAGATGCTGAAAAATTCATAGCTGAACATTGGATTCAAGCTAGTACTTGGTTACCTCCAACTGGCATTCCTTTTGATGGTGCCTTCACCAAGCACTGA 1725 0.4151 EGKDCDTMKSKIIASAVSLILVVGVVIGVVAIVSKDNGNGTSDGHQLNSHNKAITALCNDADDKKLCHEVLKPVSNSSNPKEYVETVVKTTMDSVIKAFNMSDRLTVEHGKSNPSLKMALDDCKDLLQSAIHELEASGVFVRDGNIQDVLTHSAELKNWLGAVIAYQQSCLDGFDTEGEKKIQTQLHTDSLDSVGKLTGLALDVVSGISKVLSSFNLNLNLKPASRRLLEVDHEGYPTWLSASDRKLLGAKVEGGNNGFIPHAIVAKDGSGKYKSILDAINSYPKGHQGRYVIYVKGGIYDEYIIVDKKKPNILLYGDGPSKTIITGRKNFHEGVKTMRTATFSTVADGFIAKGVTFENTAGAIGHQAVALRVQGDQSAFFDCAIRGYQDTLYAHAHRQFYRNCEISGTIDFIFGYASALIQNSKIIVRKPDPNQSNIVVADGTDQKNMPTGIVLQNCEILPESGLQADRLTIKTYLARPWKAYSRAVFIENVIGDLIHPLGYIPWAPEPNTQFSYFAEFGNTGPGANTLGRAKFAKGQINKQDAEKFIAEHWIQASTWLPPTGIPFDGAFTKH 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0398 574 Gene3D Invertase/pectin methylesterase inhibitor family protein 49 209 IPR035513 -
Lal18g0398 574 Gene3D - 258 571 IPR012334 -
Lal18g0398 574 PANTHER PECTINESTERASE 11 570 - -
Lal18g0398 574 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 51 206 IPR035513 -
Lal18g0398 574 CDD PMEI-like_3 56 210 - -
Lal18g0398 574 ProSitePatterns Pectinesterase signature 2. 406 415 IPR033131 -
Lal18g0398 574 PANTHER PECTINESTERASE 11 570 - -
Lal18g0398 574 Pfam Pectinesterase 263 556 IPR000070 GO:0030599|GO:0042545
Lal18g0398 574 Pfam Plant invertase/pectin methylesterase inhibitor 53 202 IPR006501 GO:0004857
Lal18g0398 574 TIGRFAM PME_inhib: pectinesterase inhibitor domain 41 194 IPR006501 GO:0004857
Lal18g0398 574 SUPERFAMILY Pectin lyase-like 263 567 IPR011050 -
Lal18g0398 574 SMART PMEI_2 49 204 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0398 Lal-Chr18 3380160 3382263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0398 9 567 Carbohydrate Esterase AT3G05610 38.761 1.80e-131 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0398 K01051 - gmx:100808559 833.558
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0212 5 1829651 1832106 Lal18g0398 18 3380160 3382263 LSH
Lal18g0398 18 3380160 3382263 Lal12g0544 12 3890751 3892787 PCT
Lal18g0398 18 3380160 3382263 Lal13g0552 13 3593171 3595285 PCT
Lal24g0446 24 3136250 3138178 Lal18g0398 18 3380160 3382263 PCT