Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0375 ATGTCTAACACAACCAACAATGTGGGTGGTGTTGATAACACATTTAGAAGAAAATTTGATCGAGAAGAGTATTTGGAACGAGCTCGTAAGCGTGAGAAGGAGGAAGAGGAGGGATCTCGATCCAAATCTAAAGCTAAAGGTCCTTCCTTGCAGAGGAAACCTTTGAAGCATAGAGATTATGAAGTGGACCTCGAATCCCGTTTGGGCAAGACTCAGGTTGTTACACCAGTTGCACCACTAAGTCAGCAAGCTGGATACTACTGCTCAGTTTGTGAATGTGTGGTGAAGGATTCTGCAAACTACTTGGATCATATTAATGGAAAGAAACATCAAAGAGCTTTGGGTATGTCTATGCGCGTAGAACGTGCTTCTCTCGATCAGGTTCGGGAACGATTTGAAGTTCTTAAGAAACGTAAAGACCTTGGAAGTTTCACAGAGCAAGATCTGGATGATCGGATATTAAAACAGCTACAAGAAGAGGGGGAAAGAAAGCGAATACGCCGTGAAAAGAAAAAGGAAAAGAAGGAGAAGGTGGTTGAAGAACCTGAAATTGACCCTGATGTTGCAGCCATGATGGGGTTTGGTGGTTTCGGGTCATCCAAGAAGTGA 609 0.4335 MSNTTNNVGGVDNTFRRKFDREEYLERARKREKEEEEGSRSKSKAKGPSLQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLDQVRERFEVLKKRKDLGSFTEQDLDDRILKQLQEEGERKRIRREKKKEKKEKVVEEPEIDPDVAAMMGFGGFGSSKK 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0375 202 MobiDBLite consensus disorder prediction 28 43 - -
Lal18g0375 202 Pfam Zinc-finger of C2H2 type 86 110 - -
Lal18g0375 202 Coils Coil 154 174 - -
Lal18g0375 202 Gene3D Classic Zinc Finger 80 118 - -
Lal18g0375 202 SUPERFAMILY beta-beta-alpha zinc fingers 81 127 IPR036236 -
Lal18g0375 202 PANTHER ZINC FINGER MATRIN-TYPE PROTEIN 2 1 202 IPR040107 GO:0000398|GO:0005681
Lal18g0375 202 SMART ZnF_U1_5 83 117 IPR003604 GO:0003676|GO:0008270
Lal18g0375 202 MobiDBLite consensus disorder prediction 28 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0375 Lal-Chr18 3210556 3216688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0375 4 148 C2H2 Transcription Factor Family AT3G05760 78.621 8.02e-82 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal18g0375 zf-C2H2_jaz 1.8e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0375 K12848 - gmx:100527057 285.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0375 18 3210556 3216688 Lal18g0375 18 3210556 3216688 ECH
Lal5g0172 5 1488581 1493492 Lal18g0375 18 3210556 3216688 LSH