Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0369 ATGACTTCTCTGAGTAGAGAATTGGTGTTTCTGATACTCCAATTTCTGGAGGAAGAGAAGTTCAAAGAGTCTGTACACAAGCTTGAGAAGGAATCTGGGTTTTTCTTCAACATGAAATACTTTGAAGAAAAAATACAGGCTGGTGAATGGGATGAAATTGAGAAGTACTTGTCAGGGTTTACAAAAGTTGATGATAATCGATACTCAATGAAAATATTCTTTGAAATCAGGAAGCAAAAATATCTTGAAGCACTTGATAGGCAAGACAAGGCATCAGCTGTGGAGATATTAGTTGGTGATTTGAAAGTTTTTTCCACATTCAATGAGGAACTATATAAAGAAATCACACAGCTGTTAACTCTAAATAATTTCAGAGAGAATGAGCAGCTATCCAAGTATGGTGACACCAAAACTGCAAGAGGGATTATGCTGATTGAGCTAAAGAAGCTCATAGAGGCAAATCCTCTCTTCCGTGATAAGCTTGTGTTTCCCAATCTCAAGTCCTCAAGATTAAGGACTTTAATCAATCAAAGTTTGAACTGGCAGCACCAGCTTTGCAAAAACCCAAGGCCAAATCCAGATATAAAGACTTTGTTCACAGATCACTCATGTGCACCTCCTAATGGTCCTCTAGCACCTACACCAGTGAATCTTCCTGTTGCTGCTGTTGCAAAGCCCGCTACTTATAATTCACTTGGAGCTCTTAGTCCATTTTCACCTGCTGCAGCAAATGCTAATGCAAATGCTTTGGCTGGTTGGGTGGCTAATGCCTCAGGTTCATCTTCTGTCCAAGCGGCTGTCGCCACAGCATTAACCATACCAGTCCCACAGAATCAAGTGTCTATCTTGAAGCATCCAAGAACGCCTTCATCAGGTCCCAGTATCGTTGATTATCAGAATGCTGATCATGAACAGCTAATGAAAAGGCTTCGGCCTGCTCCTTCTTTAGAGGAGGTTTCGTATCCTACAGCTCGACAAGCCCCTTGGTCACTGGATGATCTACCAAGAACAGTGGCTATGACTTTGCATGAGGGGTCCTGTGTGACAAGCATGGATTTTCATCCTTATCAGCACACCTTATTACTTGTTGGTTGTAATAATGGGGAAATTGCCCTTTGGGAAGTTGGGTTGCGAGACAGGTTGGTCTCAATGCCATTCAAGATATGGGACAAGACAAAGTGCTCATTGCCATTTCAGGCAGCTGTGGCCAAAGATGCACCTATTTCTATCAGCCGTGTCACATGGAGCCCTGATGGAGATTTTGTGGGTGTTGCATTTACCAAACATCTGATTCACTTATATTCCTTCATTGGACCAAGTGAGCTAGCCCAACGAATAGAGGTTGATGCCCATAATGGTGGCGTGAATGACTTGGCATTTGCGCATCCAAATAAGAAACTCTGTATCGTGACTTGTGGAGATGATAAGTTGATAAAGGTGTGGGATTTAATTGGACGAAGGCTATTTGAATTTGAGGGGCATGAAGCACCTGTATACTCTATCTGTCCTCACCACAAGGAGAGCATTCAGTTCGTATTTTCAACCGCTATAGATGGCAAAATAAAAGCCTGGTTATATGATAACATTGGTTCTAGGGTTGACTATGATGCTCCTGGCCACAGCTGTACTACAATGCTTTATAGTGCTGAAGGAAGTAGATTGTTTTCTTGTGGGACAAGTAAAGATGGAGAGTCATTTCTTGTTGAATGGAATGAAACTGAAGGAGCAATTAAGAGAACATACAATGGGTTCAGAAAGAAAACTGCTGGTGTTGTTCAGTTTGATACAGCCCAAAATCGCTTTTTGGCTGCTGGTGAAGACGGCCAAATCAAGTTTTGGGACATGGACAATATTAATCTTCTAGCAAGCACTGATGCAGATGGTGGACTACAGTGCCTTCCACGCTTGAGATTCAACAAGGAAGGGAATCTTCTTGCCGTTACTACTTTGGACAATGGACTCAAAATTCTTGCTAATGCTAGTGGTCTTAGATCCTTAAGAACGGTTGAAACTATGGCATTTGAAGTGTTGAGGTTGCCAATTGAATTTGCTGCAGTGAAGGTTGCATCTGGCTCTTCTGCTGTTAATGTTAATCCTGTCAACTGTAAAGTGGAAAATAACTCCCCTCTCAGGCCATCTCCAATTCTGAATGGAGTTGATCCCTTGGGTCGAAATTTGGAGAAACCAAGAATTGTGGAAGATGTAATAGATAGACCTAAATCATGGCAGCTGTCTGAAATTGTGGATCCGGTCCAATGTCGATTAGCTGCTATGCCTGACAACATAGATCCTTCCAGCAAGGTGGTTCGACTTCTATATACGAATTCTGGTGCTGGTCTTTTGGCACTTGACTCAAATGGTGTTCAGAAGCTATGGAAGTGGTCCCGCAATGAACAGAATCCCGCTGGAAAGGCCACTGCCAGTGTTGTTCCACAACATTGGCAACCCAGCAATGGTCTTCTTATGACAAATGATATCTCAGGAGTTAAACTTGATGAAGCGGTTCCTTGCATTGCACTCTCAAAGAACGATTCATACGTTATGTCTGCCTGTGGCGGAAAGGTTTCATTATTTAACATGATGACATTCAAGGTGATGACAACATTCATGCCACCGCCTCCGGCCTCTACCTATCTAGCTTTTCACCCTCAGGATAACAACATCATAGCCATTGGAATGGAGGATTCGACCATTCACATTTATAATGTTAGAGTGGATGAGGTGAAATCAAAATTGAGGGGCCACCAGAAGCGTATTAGCGGTTTAGCCTTTTCAACCAATCTTAACATCCTGGTTTCCTCTGGTGCTGATGCTCAACTCTGTGTGTGGAGCATTGATACATGGGAGAAAAGGAAATCAGTTCCATTACAACTACCGGCTGGAAAGGTACCTGTCGGTGACACTCGAGTGCAGTTCAACACCGACCAAATTCGCTTGTTGGTAGCCCACGAGACTCAGTTGGCAATATACGATGCCTCGAAGATGGAACGCATTCAGCAGTGGGTTCCACAAGATGTTCTGTCTGCTCCAATATCAAATGCATGTTATTCTTGCAACAGTCGATTAATATATGCTACATTTGTTGATGGCAACACTGGGGTTTTCGACGCTGATAGCTTGCGACTAAGATGTCGTATTGCATTGTCAACCTACTTGTCACCAACTGCTTTAAATGGAAACCAAGGTGTGTATCCTGTTGTTGCTGCAGCACATCCACTAGATCCAAACCAATTTGCTATTGGTTTGAATGATGGGTCAGTGAAAGTGATAGAGCCAATTGAATCAGAGGGTAAGTGGGGAACTAATCCACCTTTGGATAATGGAATAGGTAGAACTGCATCATCATCTACAACAAGCAACCATACACTAGATCAGACTCAAAGATAA 3387 0.4272 MTSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKIQAGEWDEIEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKASAVEILVGDLKVFSTFNEELYKEITQLLTLNNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLVFPNLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCAPPNGPLAPTPVNLPVAAVAKPATYNSLGALSPFSPAAANANANALAGWVANASGSSSVQAAVATALTIPVPQNQVSILKHPRTPSSGPSIVDYQNADHEQLMKRLRPAPSLEEVSYPTARQAPWSLDDLPRTVAMTLHEGSCVTSMDFHPYQHTLLLVGCNNGEIALWEVGLRDRLVSMPFKIWDKTKCSLPFQAAVAKDAPISISRVTWSPDGDFVGVAFTKHLIHLYSFIGPSELAQRIEVDAHNGGVNDLAFAHPNKKLCIVTCGDDKLIKVWDLIGRRLFEFEGHEAPVYSICPHHKESIQFVFSTAIDGKIKAWLYDNIGSRVDYDAPGHSCTTMLYSAEGSRLFSCGTSKDGESFLVEWNETEGAIKRTYNGFRKKTAGVVQFDTAQNRFLAAGEDGQIKFWDMDNINLLASTDADGGLQCLPRLRFNKEGNLLAVTTLDNGLKILANASGLRSLRTVETMAFEVLRLPIEFAAVKVASGSSAVNVNPVNCKVENNSPLRPSPILNGVDPLGRNLEKPRIVEDVIDRPKSWQLSEIVDPVQCRLAAMPDNIDPSSKVVRLLYTNSGAGLLALDSNGVQKLWKWSRNEQNPAGKATASVVPQHWQPSNGLLMTNDISGVKLDEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTYLAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKLRGHQKRISGLAFSTNLNILVSSGADAQLCVWSIDTWEKRKSVPLQLPAGKVPVGDTRVQFNTDQIRLLVAHETQLAIYDASKMERIQQWVPQDVLSAPISNACYSCNSRLIYATFVDGNTGVFDADSLRLRCRIALSTYLSPTALNGNQGVYPVVAAAHPLDPNQFAIGLNDGSVKVIEPIESEGKWGTNPPLDNGIGRTASSSTTSNHTLDQTQR 1128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0369 1128 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1128 IPR027728 GO:0006355
Lal18g0369 1128 SMART WD40_4 817 859 IPR001680 GO:0005515
Lal18g0369 1128 SMART WD40_4 1000 1036 IPR001680 GO:0005515
Lal18g0369 1128 SMART WD40_4 439 482 IPR001680 GO:0005515
Lal18g0369 1128 SMART WD40_4 905 944 IPR001680 GO:0005515
Lal18g0369 1128 SMART WD40_4 484 525 IPR001680 GO:0005515
Lal18g0369 1128 SMART WD40_4 391 435 IPR001680 GO:0005515
Lal18g0369 1128 SMART WD40_4 862 902 IPR001680 GO:0005515
Lal18g0369 1128 SMART WD40_4 1050 1091 IPR001680 GO:0005515
Lal18g0369 1128 SMART WD40_4 574 614 IPR001680 GO:0005515
Lal18g0369 1128 SMART WD40_4 335 374 IPR001680 GO:0005515
Lal18g0369 1128 SUPERFAMILY WD40 repeat-like 342 656 IPR036322 GO:0005515
Lal18g0369 1128 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Lal18g0369 1128 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Lal18g0369 1128 SMART ctlh 34 92 IPR006595 -
Lal18g0369 1128 Gene3D - 277 537 IPR015943 GO:0005515
Lal18g0369 1128 Gene3D - 829 1099 IPR015943 GO:0005515
Lal18g0369 1128 ProSiteProfiles Trp-Asp (WD) repeats profile. 592 623 IPR001680 GO:0005515
Lal18g0369 1128 PANTHER PROTEIN, PUTATIVE-RELATED 1 1128 - -
Lal18g0369 1128 MobiDBLite consensus disorder prediction 1095 1128 - -
Lal18g0369 1128 Pfam WD domain, G-beta repeat 911 944 IPR001680 GO:0005515
Lal18g0369 1128 Pfam WD domain, G-beta repeat 448 482 IPR001680 GO:0005515
Lal18g0369 1128 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 912 947 - -
Lal18g0369 1128 ProSitePatterns Trp-Asp (WD) repeats signature. 469 483 IPR019775 -
Lal18g0369 1128 ProSiteProfiles Trp-Asp (WD) repeats profile. 912 953 IPR001680 GO:0005515
Lal18g0369 1128 SUPERFAMILY WD40 repeat-like 832 1092 IPR036322 GO:0005515
Lal18g0369 1128 ProSiteProfiles Trp-Asp (WD) repeats profile. 448 483 IPR001680 GO:0005515
Lal18g0369 1128 MobiDBLite consensus disorder prediction 1107 1128 - -
Lal18g0369 1128 SMART Lish 4 36 IPR006594 GO:0005515
Lal18g0369 1128 Gene3D - 538 692 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0369 Lal-Chr18 3146864 3157274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0369 392 658 Miscellaneous Gene Families AT5G08390 21.691 2.37e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0369 - - gmx:100793575 1956.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0369 18 3146864 3157274 Lal18g0369 18 3146864 3157274 ECH
Lal3g1440 3 20323713 20333831 Lal18g0369 18 3146864 3157274 LSH
Lal18g0369 18 3146864 3157274 Lal12g0584 12 4170238 4183747 PCT
Lal18g0369 18 3146864 3157274 Lal24g0499 24 3510419 3531762 PCT
Lal12g0584 12 4170238 4183747 Lal18g0369 18 3146864 3157274 PCT
Lal24g0499 24 3510419 3531762 Lal18g0369 18 3146864 3157274 PCT