Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0368 ATGGAGCATATATCCTCTATGTTCAATGGGTTGGCGAGGTCGTTTTCGACGAGAAAGGGAAAGAGTTCTAAGAGGCATGGTGGGAAAGAAGCTGTTGAAGCAATGACAAAATATGCTGAGAAAAATGACTTGATATTGTGTAGCTCTGGCACTGTTAATGTAGATGATTCAAACAACTTTGCCTCAATTTTCTCCAAGAGAGGCAAGAAAGGAGTGAACCAAGATTGCTGCATAGTGTGGGAGGAATTTGGATGCCAAGAGGACATGATCTTTTGTGGAATTTTTGATGGGCATGGGCCATGGGGTCACTTTGTGGCTAAAAGAGTAAGAAAATCAATGCCATCAACTTTGCTATGTAACTGGCAAGAGATAATTGCTCAAACTTCACTTGATTTAGATTATGAGAAGAAGGAACATCAATTTAATATATGGAAACATTCTTACTTGAAAACTTGTGCTGCAATTGATCAAGATCTCGAGCATTATCGCAAGATAGACTCGTTTTACAGCGGAACTACTGCCCTCTCAATTGTTAGACAGGGTGAACTCATGGTGATAGCAAATGTTGGTGACTCCCGTGCTGTGTTAGCAACAACATCAGATGATGGGAATGTTGTACCAGTTCAGCTAACAATTGATTTCAAGCCCAACTTACCCGAGGAGGCAGAGAGAATCAATGAGTGTCAAGGAAGGGTGTTCAGCTTAAATGATGAGCCAGGGGTGCATAGGGTGTGGTTGCCTGATGAAGAGTCTCCTGGACTTGCAATGTCAAGAGCTTTTGGAGACTATTGCATCAAAGACTATGGTCTTATTTCTGTGCCTGAGGTTACACAAAGGACTATAACCACCAGAGACCACTTTGTTGTGCTTGCTACTGATGGGGTTTGGGATGTAATCTCCAATGAAGAAGCAATAGATATTGTATCTTCAACAGAAGACAAAGCAAAAGCAGCTAAAAAGCTAGTGGAGTGTGCAATGCATGCATGGAAAGGCAAAAGGAGAGGCATTGCCATGGATGACATTTCAGCTATTTGTCTCTTCTTTCACTCTTCCCATTCACATCATCAATTCCTAAAATAG 1080 0.4157 MEHISSMFNGLARSFSTRKGKSSKRHGGKEAVEAMTKYAEKNDLILCSSGTVNVDDSNNFASIFSKRGKKGVNQDCCIVWEEFGCQEDMIFCGIFDGHGPWGHFVAKRVRKSMPSTLLCNWQEIIAQTSLDLDYEKKEHQFNIWKHSYLKTCAAIDQDLEHYRKIDSFYSGTTALSIVRQGELMVIANVGDSRAVLATTSDDGNVVPVQLTIDFKPNLPEEAERINECQGRVFSLNDEPGVHRVWLPDEESPGLAMSRAFGDYCIKDYGLISVPEVTQRTITTRDHFVVLATDGVWDVISNEEAIDIVSSTEDKAKAAKKLVECAMHAWKGKRRGIAMDDISAICLFFHSSHSHHQFLK 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0368 359 PANTHER CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C 1 356 - -
Lal18g0368 359 CDD PP2Cc 59 348 IPR001932 -
Lal18g0368 359 SUPERFAMILY PP2C-like 58 349 IPR036457 -
Lal18g0368 359 Gene3D - 44 351 IPR036457 -
Lal18g0368 359 Pfam Protein phosphatase 2C 81 326 IPR001932 -
Lal18g0368 359 SMART PP2C_4 47 346 IPR001932 -
Lal18g0368 359 PANTHER ALPHABET, ISOFORM E-RELATED 1 356 - -
Lal18g0368 359 ProSiteProfiles PPM-type phosphatase domain profile. 60 348 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0368 Lal-Chr18 3135445 3139477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0368 1 349 PP2C-type Phosphatase Gene Family AT3G05640 70.370 0.0 527
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0368 - - gmx:100801309 592.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g1441 3 20341934 20346405 Lal18g0368 18 3135445 3139477 LSH
Lal5g1242 5 15156890 15157642 Lal18g0368 18 3135445 3139477 LSH
Lal3g0484 3 3432190 3432969 Lal18g0368 18 3135445 3139477 LSH
Lal18g0368 18 3135445 3139477 Lal12g0585 12 4190478 4194050 PCT
Lal18g0368 18 3135445 3139477 Lal22g0309 22 1948701 1949447 PCT
Lal12g0585 12 4190478 4194050 Lal18g0368 18 3135445 3139477 PCT
Lal22g0309 22 1948701 1949447 Lal18g0368 18 3135445 3139477 PCT