Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0367 ATGCATGGGGCAGATGATGGTGAGAGGAATAAGAGACTTGCCATTATTGGGGTCTCAACATTCTTATTGGTGGCTATGGTTATAGGTGTAACCTTTAGTATCAGCACCAATAAGTCTGTGCTCAATGAAGAAGATCCAAAAGAAAATAGCAAGTCTCATGTATCATCCACAATGAAAGCTGTTATATCTCTTTGTCAACCCACAGATTATAGAGAAGAATGTGTTGAGAATCTTTCTAAGGAGGCTGGAAATACTACTGACCCAAGAGAGCTTATAAAAATTGCATTCCAAATAACCATTAATAGAATTGGTGAGGGACTTAAGAAAACAAATATTTTGCAAGATGTTGAGAAAGACCCTAGAGCCAAAGGGGCTCTTGTTACATGCAAACAACTCATGGATCTTTCTGTTGGGGAGTTCAATAGGTCACTTGAGAAATTGGGCAAGTTTAATCTCAACAACCTTGACAACATCCTCACAAGTTTGAAGGTTTGGCTTAGTGGTGCAATTACATACCAAGAAACTTGTTTAGATGCATTTGAGAACACCACTTCTCAAGCTGGTAATAAGATGAAGGAAATATTGCAAACTTCTATGCACATGAGCAGCAATGGTCTTTCCATAATCAATGAGCTTTCTAAAACTCTCTCCTCTTTGCATATCACAAAAACTTCCGGCCGCCGTCTCCTCCTGGATGCTGATGATTTACCAGTTCTTGGTCACGATGACGACGGCGATGATGACCTTCCTGAATGGGTTGAGGATGGTGTTGGTGTTAGGAGACTTCTTAAAATGAATGCAAGAAAATACATGGCTAATGTCATTGTTGCCAAAGATGGTAGTGGAAATTTCACCAAAATTAGTGAGGCATTGAAGCATGTTCCTAAGAAGAATCAAAAACCATTCATTATATGGATCAAGGAAGGTGTTTATCATGAGTATGTTCAAGTTTCTAAGGATATGACTCATGTTGTGTTTGTTGGTGATGGTGCCAAAAAGACAAGAATCACTGGTAACAAGAATTTCATTGATGGAATTAACACTTACAATACAGCCACTGTTGCTGTTCAAGGAGATTACTTTGTTGGCATTGGTGTTGGGTTTGAGAACTCTGCTGGTGCACACAAACATCAAGCAGTTGCATTAAGAGTTCAAGCTGATAAGTCCATCTTCTACAAATGCAGAATGGATGGGTTCCAAGACACACTTTATGCACATGCATTGCGTCAATTCTATAGAGATTGCACTATTTCAGGTACCATTGACTTTGTCTTTGGTGATGCAGTTGCTGTTTTCCAAAACTGCACTTTTGTGGTCCGAAAACCAATGCAAAACCAACAATGCATTGTCACAGCACAAGGCAGAAAAGAAAGGTACCAACCATCAGGAATAATCATCCAAGGTGGTTCAATTGTATCAGACCCTAAGTACTACCCAGTGAGATTTGATAACAAAGCTTACTTAGCTCGTCCATGGAAGAATTTTTCAAGAACTGTTTTCTTGGACACTTACATTGGTGATTTAATCCAACCTGATGGATATATGCCATGGCAAACAGCAACAGGAATTCCTACAAATACAGACACATGTTTCTATGCTGAAGTTAATAATCGTGGACCTGGTGCAGACATAACTAAACGTGTTAAATGGCAAGGTGTTAAGAAACTTACACCACAAGTAGCAACTAGTTTCTTTCCTTCCAAGTTTTTCCATGGTGATGATTGGATTAGGGTTACTAAAATTCCTTACTTCTCTGGTGAGAAATCCTCCAAGGATTAG 1779 0.3912 MHGADDGERNKRLAIIGVSTFLLVAMVIGVTFSISTNKSVLNEEDPKENSKSHVSSTMKAVISLCQPTDYREECVENLSKEAGNTTDPRELIKIAFQITINRIGEGLKKTNILQDVEKDPRAKGALVTCKQLMDLSVGEFNRSLEKLGKFNLNNLDNILTSLKVWLSGAITYQETCLDAFENTTSQAGNKMKEILQTSMHMSSNGLSIINELSKTLSSLHITKTSGRRLLLDADDLPVLGHDDDGDDDLPEWVEDGVGVRRLLKMNARKYMANVIVAKDGSGNFTKISEALKHVPKKNQKPFIIWIKEGVYHEYVQVSKDMTHVVFVGDGAKKTRITGNKNFIDGINTYNTATVAVQGDYFVGIGVGFENSAGAHKHQAVALRVQADKSIFYKCRMDGFQDTLYAHALRQFYRDCTISGTIDFVFGDAVAVFQNCTFVVRKPMQNQQCIVTAQGRKERYQPSGIIIQGGSIVSDPKYYPVRFDNKAYLARPWKNFSRTVFLDTYIGDLIQPDGYMPWQTATGIPTNTDTCFYAEVNNRGPGADITKRVKWQGVKKLTPQVATSFFPSKFFHGDDWIRVTKIPYFSGEKSSKD 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0367 592 Gene3D - 267 587 IPR012334 -
Lal18g0367 592 CDD PMEI-like_3 63 214 - -
Lal18g0367 592 ProSitePatterns Pectinesterase signature 2. 417 426 IPR033131 -
Lal18g0367 592 Pfam Plant invertase/pectin methylesterase inhibitor 61 208 IPR006501 GO:0004857
Lal18g0367 592 SUPERFAMILY Pectin lyase-like 272 585 IPR011050 -
Lal18g0367 592 SMART PMEI_2 56 208 IPR006501 GO:0004857
Lal18g0367 592 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 61 213 IPR035513 -
Lal18g0367 592 Pfam Pectinesterase 273 573 IPR000070 GO:0030599|GO:0042545
Lal18g0367 592 PANTHER PECTINESTERASE 13 588 - -
Lal18g0367 592 TIGRFAM PME_inhib: pectinesterase inhibitor domain 54 212 IPR006501 GO:0004857
Lal18g0367 592 Gene3D Invertase/pectin methylesterase inhibitor family protein 56 214 IPR035513 -
Lal18g0367 592 PANTHER PECTINESTERASE 13 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0367 Lal-Chr18 3126745 3129366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0367 5 586 Carbohydrate Esterase AT3G05610 46.747 0.0 578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g1446 3 20394155 20398193 Lal18g0367 18 3126745 3129366 LSH
Lal18g0367 18 3126745 3129366 Lal24g0503 24 3550215 3554426 PCT