Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0355 ATGCAAGACATTTTTGGATCAGTTCGTCGATCTCTCGTGTTTCGTTCTTCGCCGGAGAACGAAGAACCGTCGCATTCTCTCAGAGGAACCCTCGTTGACAAGATCAGTTGCTGTATCCGTAATTCCAGAGTATTCTCCAAACCTTCTCCGACTACGATTCGATGGCGCAAGGGCGAGTTGATTGGTTGCGGTGCTTTTGGTCATGTTTATGTTGGAATGAATCTCGATTCTGGAGAACTTCTAGCTGTTAAACAGGTTTTGATTGCAGCGAGTAGCACTTCGAAGGAGAAGGCAAAGGCCCACATAAAAGAGCTTGAGGAAGAAGTTAAGCTTCTTAAAGATCTTTCACATCCCAATATTGTTAGATATTTGGGTACAGTTAGAGAGGAGGAAAGTTTAAATATTCTCCTGGAGTTTGTTCCTGGTGGATCCATATCATCACTATTGGGGAAGTTTGGAGCTTTCCCCGAGGCTGTCATAAGAACTTACACGAAGCAAATACTGGTTGGACTTGAGTACTTGCACAAAAATGGAATTATTCACAGAGACATTAAGGGAGCCAATATCCTTGTAGATAATAAAGGGTGTATAAAACTTGCAGATTTTGGGGCATCCAAGCAAGTCGTTGAGTTGGCTACCATTTCCGGTGCCAAATCTATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTTATTCTCCAGACTGGGCATAGCTTCTCTGCTGACATATGGAGCGTCGGTTGTACTGTGATTGAGATGGCCACTGGAAAGCCTCCATGGAGCCAGCAATACCAACAAGAGGTTGCTGCTCTTTTCCATATAGGGACGACCAAGGCTCATCCGCCAATACCTGATCATCTATCTGCTGGAGCAAAAGATTTCCTGATAAAATGTTTGGAGAAGGAACCATATTTGAGGCCATCAGCATCAGAGTTGTTGCAGCATCCCTTTGTTACTGGAGAATCTATGGATACTCTTCCTATGTCCTCCACTGCCTTGGAAAATTTTGAAGCTTCATCATCATGTGCCCCAAATGTTGACTCCTTCCTTTGCTCCTCAACTGTAAATACTCAGGGTTCAGGAAATAAACAGTTGTGGAGAATCAGCAATGATGATGACATGTGTGTGATTGATGACAAAGATGAGTTCTTGCAGTGTGGTGTCAAACATAAATCATTGATGTCGGAAAATATTGAGAGTTTCAACCCAATGTCTGATCCTTCTGATGATTGGAGGTGTAAATTTGATGCGAGTCCAGAACTGGAACATAGAGAAGTTGGTTTTGACATTGATGAAAGTTACATGCCATGTGGTCAATCAGGGGCAAATGAGGGGCGGAATGATTTTTCCTTTCCAAGTGTGCCATCTCTGACAGAGGAAGAAAACGAGCTCACAGAGTCAAAAATTAAAGACTTTTTAGCTGAGAAGGCTCTTGAACTGAAAATACTCCAGACACCTTTATACGAAGAGTTCTACAACACTTTAAATACATCTTTCTCTCCCAATGTGATTAATAGCCCAGGTAATGAAGCTGGTGGTCGAAAATACTTGAAATTACCTCCTAAAAGCAGGTCACCAAGTCGGGCACCAAGTAACACTCCATCTAAAGCAGTTGACAAAGCTGGAAGTCCTGGAAGTAACAATAGGTCCTCATCAACTATTGGCAGTGTAAATAATCATTGTTCACAGGATATTCCAGTATCTCCTCTTACTGAAAGTAACAGACTGTCCCAGCAAGATTCAAGTAGCCCGAGTTTAAGCGATTCTGAGAGACTGAGGAAGTGGGAAGAAGAGCTCTACCAAGAGCTTGAGAGAAAGAGAGAAATGAAACGCCAAACTGGTATGGGAGCTTTACATAGGCAAAGAGAGCGGTCAAGATTTGCTTCGCCCAGCTAA 1896 0.4293 MQDIFGSVRRSLVFRSSPENEEPSHSLRGTLVDKISCCIRNSRVFSKPSPTTIRWRKGELIGCGAFGHVYVGMNLDSGELLAVKQVLIAASSTSKEKAKAHIKELEEEVKLLKDLSHPNIVRYLGTVREEESLNILLEFVPGGSISSLLGKFGAFPEAVIRTYTKQILVGLEYLHKNGIIHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQQEVAALFHIGTTKAHPPIPDHLSAGAKDFLIKCLEKEPYLRPSASELLQHPFVTGESMDTLPMSSTALENFEASSSCAPNVDSFLCSSTVNTQGSGNKQLWRISNDDDMCVIDDKDEFLQCGVKHKSLMSENIESFNPMSDPSDDWRCKFDASPELEHREVGFDIDESYMPCGQSGANEGRNDFSFPSVPSLTEEENELTESKIKDFLAEKALELKILQTPLYEEFYNTLNTSFSPNVINSPGNEAGGRKYLKLPPKSRSPSRAPSNTPSKAVDKAGSPGSNNRSSSTIGSVNNHCSQDIPVSPLTESNRLSQQDSSSPSLSDSERLRKWEEELYQELERKREMKRQTGMGALHRQRERSRFASPS 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0355 631 Pfam Protein kinase domain 56 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal18g0355 631 MobiDBLite consensus disorder prediction 587 631 - -
Lal18g0355 631 MobiDBLite consensus disorder prediction 498 631 - -
Lal18g0355 631 Coils Coil 88 115 - -
Lal18g0355 631 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Lal18g0355 631 ProSiteProfiles Protein kinase domain profile. 55 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal18g0355 631 CDD STKc_MAPKKK 54 318 - -
Lal18g0355 631 SUPERFAMILY Protein kinase-like (PK-like) 51 357 IPR011009 -
Lal18g0355 631 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 589 - -
Lal18g0355 631 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE NPK1-LIKE ISOFORM X1 1 589 - -
Lal18g0355 631 Coils Coil 586 612 - -
Lal18g0355 631 ProSitePatterns Protein kinases ATP-binding region signature. 61 84 IPR017441 GO:0005524
Lal18g0355 631 Gene3D Transferase(Phosphotransferase) domain 1 53 347 - -
Lal18g0355 631 MobiDBLite consensus disorder prediction 525 586 - -
Lal18g0355 631 SMART serkin_6 55 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0355 Lal-Chr18 3009891 3015112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0355 1 630 MAP Kinase Kinase Kinase AT1G54960 55.523 0.0 655
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lal18g0355 Pkinase 2.9e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0355 K20606 - gmx:100807537 939.488
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0142 5 1251830 1256799 Lal18g0355 18 3009891 3015112 ECH
Lal18g0355 18 3009891 3015112 Lal18g0355 18 3009891 3015112 ECH