Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0347 ATGGATCATCAAGGGCATGTCCAGAACCCAAATATGGGGGTTGTCGGTAGCGGAGCTCAACTGTCATACGGTTCTATTCCTTATCAGCAAAACCAAATGACTGGAGCCCCAGGGTCAGTTGTTACATCTGCTGGGAACATGCAATCCACCGGTCAACCTGTTGGAGCTCAGCTGGGACAACATCAACTTGCTTATCAGCATATTCATCAGCAACAACAGCAGCAACTTCAGCAACAGCTGCAACAGTTTTGGGCAACTCAATACCAAGAGATTGAGAAGGTTACCGATTTCAAAAATCACAGCCTTCCCCTGGCAAGGATCAAGAAGATTATGAAAGCTGATGAGGATGTCCGAATGATATCAGCTGAAGCACCAGTCATATTTGCAAGGGCATGTGAAATGTTCATATTAGAGTTAACCCTGCGCTCCTGGAATCACACTGAAGAGAACAAAAGGAGAACCCTTCAAAAGAATGACATTGCTGCAGCAATCACAAGGACTGATATCTTTGATTTCTTGGTTGACATTGTGCCTCGTGAGGACTTGAAAGATGAAGTGCTCGCATCAATACCCAGAGGAACAATGCCTGTTGCAGGGCCTGCTGACACACTTCCTTATATGTATATGCAACCTCAGCATGTACCCCAAGCCGGAGCGCCCGGTGTCATAATGGGCAAACCTGTGATGGATCCAAACATGTATGCTCAGCAGCCTCATCCCTACATGGTACCACAAATGTGGCCACAGCCACAAGACCAACGACCATCATCTCCCGATCATTAG 783 0.4687 MDHQGHVQNPNMGVVGSGAQLSYGSIPYQQNQMTGAPGSVVTSAGNMQSTGQPVGAQLGQHQLAYQHIHQQQQQQLQQQLQQFWATQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVAGPADTLPYMYMQPQHVPQAGAPGVIMGKPVMDPNMYAQQPHPYMVPQMWPQPQDQRPSSPDH 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0347 260 Gene3D Histone, subunit A 63 179 IPR009072 GO:0046982
Lal18g0347 260 SUPERFAMILY Histone-fold 56 173 IPR009072 GO:0046982
Lal18g0347 260 Pfam Core histone H2A/H2B/H3/H4 62 164 IPR007125 GO:0003677
Lal18g0347 260 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 260 - -
Lal18g0347 260 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0347 Lal-Chr18 2975284 2977927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0347 1 247 CCAAT-HAP5 Transcription Factor Family AT1G08970 62.500 9.40e-86 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lal18g0347 CBFD_NFYB_HMF 5.8e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0347 K08066 - gmx:100527803 404.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0134 5 1214248 1217142 Lal18g0347 18 2975284 2977927 LSH
Lal18g0347 18 2975284 2977927 Lal12g0599 12 4301091 4301465 PCT
Lal18g0347 18 2975284 2977927 Lal13g0659 13 4257679 4260262 PCT
Lal12g0599 12 4301091 4301465 Lal18g0347 18 2975284 2977927 PCT
Lal13g0659 13 4257679 4260262 Lal18g0347 18 2975284 2977927 PCT