Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0328 ATGGCATCATCTGACCAAAACGACACCGTTTCCGCCCCAGAAGACATGAACAACGACGACGACGATGAATCTCACGATGACTTATTAGAAGAAGAGGAAGAAGAAGAAGAAGAAGAAGAATTCGACGACGACGTTTTACCCGATTTCGACGATAACCATCCTTCCCTTTCCACCTCCTCCGCCCTCGCCGTCACCGTCGCCGTTCCACCTCCGATTTCACCTCTCACCACTATCACCGCCGTCTCCGACTCAAAACAACACCAAGTCGAAGATAAAAAACCAATCGATGATTCCAGAAGACTCTTTCAACGTCTTTGGACCGATGAAGATGAGATCGAACTCTTACAAGGCTTCCTCGATTACACTTCTCAGCGTGGATCATCTCATCATAACGACACTGCTTTGTTCTATTATCAGATCAAATCGAAACTTCAGCTTGATTTCAATAAGAATCAGTTAGTGGAGAAGATTCGAAGGTTGAAGAAGAAGTACCGTAACGTTCTTAACAAAATCAGCTCCGGTAAGGATTTTTCGTTCAAGAGTGCTCATGATCAAGCGACTTTCGAAATCTCGCGCAAGATCTGGAGCAATATTGGTCAAATCACCGGTGGTGGTGTTGATGATAATGCTTTGGATGAAGATGAAATCAATCTTAACCCGATTCAAAACCCTAATAACCATAACCCTAACATTAATCTCAATTTGGTTCAGCCGGGGCCAAAATATGAGGTAGTGATGCTAGGAAATTCAGGGGAGAAGAAGAGTACGCCATCTAGGAAGAGATCGCGGCCAAGATCGACGATGATGAGGATCGATGAGAAACCACATGAGTTTTTGAACGATGGATCGGGATCAGGGTTGAATTTGAATTTGAACCAGGATCATAAGTGTATTAGCAATTCTACTAATGCAAGGGTTGCTGCTAATGTTAACAATAATAAGAATTATGAGAATAATTGTAACAGTGGGAAGCAGCATAGTAGTAATAGTAGTAAACCTGGTTTGATTGAAGAGACGGTGAGGAGTTGTTTGACGCCGGTGTTGAAGGAGTTAGTGGCTGGTGGTGGTGGTGTCATGGGAGGAGGTACGTTTGGGGCGAGAGGATTTGGAATTGGAGGGTTCGGATCGATGAATTCGATACCAATGCCAATGATGCCATTGAGTTATTTGGGGTTGGGGAGTGGTGGAGATGTGGTGAATGAGAAGTGGAGGAAGCAACAGATTTTGGAATTGGAAGTTTACGCGAAGCGATTGGAGCTGGTGCAGGATCAGATCAAGGCTGCTTTGGAGGAGTTAAGATCAGCTGGAGGAGGATGA 1317 0.445 MASSDQNDTVSAPEDMNNDDDDESHDDLLEEEEEEEEEEEFDDDVLPDFDDNHPSLSTSSALAVTVAVPPPISPLTTITAVSDSKQHQVEDKKPIDDSRRLFQRLWTDEDEIELLQGFLDYTSQRGSSHHNDTALFYYQIKSKLQLDFNKNQLVEKIRRLKKKYRNVLNKISSGKDFSFKSAHDQATFEISRKIWSNIGQITGGGVDDNALDEDEINLNPIQNPNNHNPNINLNLVQPGPKYEVVMLGNSGEKKSTPSRKRSRPRSTMMRIDEKPHEFLNDGSGSGLNLNLNQDHKCISNSTNARVAANVNNNKNYENNCNSGKQHSSNSSKPGLIEETVRSCLTPVLKELVAGGGGVMGGGTFGARGFGIGGFGSMNSIPMPMMPLSYLGLGSGGDVVNEKWRKQQILELEVYAKRLELVQDQIKAALEELRSAGGG 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0328 438 MobiDBLite consensus disorder prediction 1 56 - -
Lal18g0328 438 Coils Coil 150 170 - -
Lal18g0328 438 MobiDBLite consensus disorder prediction 14 47 - -
Lal18g0328 438 Coils Coil 411 435 - -
Lal18g0328 438 PANTHER BNAANNG10740D PROTEIN-RELATED 1 436 IPR007592 GO:0006355
Lal18g0328 438 Coils Coil 18 38 - -
Lal18g0328 438 PANTHER BNAANNG10740D PROTEIN 1 436 - -
Lal18g0328 438 Pfam Protein of unknown function, DUF573 102 196 IPR007592 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0328 Lal-Chr18 2767122 2768438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0328 3 438 GeBP Transcription Factor Family AT5G28040 44.924 9.97e-97 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Lal18g0328 DUF573 6.7e-34 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0328 - - gmx:100779712 367.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0097 5 913069 914355 Lal18g0328 18 2767122 2768438 LSH
Lal3g1499 3 20785407 20786696 Lal18g0328 18 2767122 2768438 LSH