Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0316 ATGTGTGGTGGTGCTATTATCTCCGACTTCATCTCCGCCGGCGGAGCTCCGGCGAGGTCTCGTATTCTCACCGCTGATTACCTCTGGCCGGATTTGAAGAAAAGTGGTTCAGCGAAGAATAAGTTGAAGAAGAAGGTGCTAATCGATTTGGACGATGATTTCGAAGCTGATTTTAGGGATTTCAACGAAGATTCTGAAGTCGATGATGATGATGATGTTTTCATGATGGATTCCAAAAAGAAGCCCTCTGTTTTTAGATCCACCAAACCTTCCAATTCAATCTCTCATGGTTCTATTGCTGATTTTCTCCAAGCTCGTCTCAAATGGTTTTTGGAGGATTTTGGAAGTGGATCTACCGCTGAAAAACCTGTGGTGTTTGAAGCACAAGAGCAAGCTGACAAGTGTGTGAAGAGGAAGAGAAAGAATCAATATAGGGGAATTCGTCAGCGTCCTTGGGGAAAATGGGCAGCTGAGATCAGAGATCCGAGAAAGGGGGTTCGTGTCTGGCTCGGAACCTTCCGCACTGCTGAGGAAGCTGCAAGAGCATATGATGCTGAAGCGCGTAGGATCCGTGGAAGGAAAGCCAAGGTCAATTTCCCTGATGAAGCTCAAGATGCTTCCCCCAAACGTTCCAAGGCAAATCCACAGGAACAACTTACAAAGGAAAAGGTGAACACTGTTCAGCCTAATGGCAATCTGAGCCAGAAGTTCAATGTTGTCGGTAGCAATCAGGACAACATCTATACTTCTATAGATCTGGTGGAACAGAAGCCACTGGTCAACCGGTATGCTAACATGGGTTCATTCCCTACAAGTGTACATGAGATTGATTCTCTTGCTTCATCTGATGATTTGACCCGTTATTTCAGTTCAGATCAGGGGAGTAATTCATTTGATTATTCAGATCTTCCTGAGATCTCATCCATGCTTTCTGCTCCTCTGGAAGGTGAATCTCATTTCGTGCAAAATGCCAATCAGCAGCAGAACATCCTGCATTCTAACTCTCAGGATGCTTCTGCCAAGTCATTGTCTGATGAGCTTGCGGAAATTGAATCCGAGTTGAACTTCTTCAAGATGCCATATCTTGAAGGGAGTTGGGGTGATGCTTCAATGGAATCCCTGCTTGCTGGAGATACAACTCAGTATGGTGGAAACCTGATGAACCTTTGGAGCTTTGATGACATTACCATGGGATGTGGTGGAGTTCTCTGA 1212 0.4521 MCGGAIISDFISAGGAPARSRILTADYLWPDLKKSGSAKNKLKKKVLIDLDDDFEADFRDFNEDSEVDDDDDVFMMDSKKKPSVFRSTKPSNSISHGSIADFLQARLKWFLEDFGSGSTAEKPVVFEAQEQADKCVKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFRTAEEAARAYDAEARRIRGRKAKVNFPDEAQDASPKRSKANPQEQLTKEKVNTVQPNGNLSQKFNVVGSNQDNIYTSIDLVEQKPLVNRYANMGSFPTSVHEIDSLASSDDLTRYFSSDQGSNSFDYSDLPEISSMLSAPLEGESHFVQNANQQQNILHSNSQDASAKSLSDELAEIESELNFFKMPYLEGSWGDASMESLLAGDTTQYGGNLMNLWSFDDITMGCGGVL 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0316 403 MobiDBLite consensus disorder prediction 195 222 - -
Lal18g0316 403 SUPERFAMILY DNA-binding domain 143 202 IPR016177 GO:0003677
Lal18g0316 403 ProSiteProfiles AP2/ERF domain profile. 143 200 IPR001471 GO:0003700|GO:0006355
Lal18g0316 403 Gene3D AP2/ERF domain 142 201 IPR036955 GO:0003700|GO:0006355
Lal18g0316 403 PANTHER DNA-BINDING DOMAIN 1 397 IPR044808 GO:0003700|GO:0009873
Lal18g0316 403 CDD AP2 143 201 IPR001471 GO:0003700|GO:0006355
Lal18g0316 403 SMART rav1_2 143 206 IPR001471 GO:0003700|GO:0006355
Lal18g0316 403 PRINTS Ethylene responsive element binding protein signature 144 155 IPR001471 GO:0003700|GO:0006355
Lal18g0316 403 PRINTS Ethylene responsive element binding protein signature 166 182 IPR001471 GO:0003700|GO:0006355
Lal18g0316 403 Pfam AP2 domain 143 192 IPR001471 GO:0003700|GO:0006355
Lal18g0316 403 PANTHER EREBP TRANSCRIPTION FACTOR 1 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0316 Lal-Chr18 2636002 2638344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0316 1 401 AP2-EREBP Transcription Factor Family AT3G14230 43.823 3.18e-58 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal18g0316 AP2 2.7e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0316 K09286 - gmx:100170723 387.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0316 18 2636002 2638344 Lal18g0316 18 2636002 2638344 ECH
Lal6g0580 6 3728285 3731759 Lal18g0316 18 2636002 2638344 LSH