Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0313 ATGAACTACATCAAACAAGCCCCACCCAAGAAAAATAATAATAAGTTCTTTTTGGCCCTCTTAGCTACTTTCCTTCTTGCAACCACCGTAGTTGGCATTGTCGTCGGAGTAATCACACGCAGAAACTCCGACGACAATACCAACTCCATCATAAAAAGTGCTTGTAGCAGCACATTGTACCCTGAACTTTGCTTCTCAACCATAACCTCTGAACCATCAAGTGTTACCAACAAAGTTTCAAGCCATAAAGATGTGATACTCTTATCCTTGAACATATCCACAGGAACTGTTGAACGCAATTACTTCACCATTAAGAAACTCTTAAACCAAAAAGGGAGAACTAAGAGAGAAAAAGTAGCACTCCATGATTGCTTAGAAACCATTGATGAGTCACTCTATGAGCTTAAAAAAGCAATAGATGAACTCAAAGATTACCCATCTAGTAAAAAATCACTTTTTCAGCATGCTGATGATCTCAAAACTTTGCTGAGTTCAGCCATAACAAACCAAGAAACATGCCTAGATGGTTTCTCACATGATGAAGCTTGCAAACGCACTAGGAAAAATGTAGAGGGAGGGCAAGTGCATGTGGAGCATTTGTGTAGCAATGCTTTGGCTATGGTCAAGAACCTCACTGATACTGATATGGCCAATGATGAGAACAATAAAATGATGGTGGGAACCAACAACAGGAAGCTCAAGGAGGAGGGTGAGATTAAGTGGCCGGAGTGGATCTCTGCCGCGGATAGGCGGCTTCTGCAGTCATCTACAGTTACACCGAATGTAGTGGTGGCGGCTGATGGCAGCGGCAACTATAAGACGGTGTCGGCGGCCGTGGCAGCTGCACCTGAGAACAGTGCAAAAAGATATGTAATAAGGATAAAAGCAGGAGTGTATAAAGAAAATGTGGATGTGCCTAAGAAGAAGACTAATATAATGTTCTTGGGTGATGGAAGATCTAACACTATCATCACAGCTAGTAAAAATGTTTTTGATGGCAGCACAACCTTCAACTCAGCCACTGTCGCTGCAGTAGGAGAAAGATTCTTAGCAAAAGACATAACCTTTCAAAATACAGCAGGTCCTTCAAAGCACCAAGCAGTGGCACTTAGAGTAGGATCAGACCTATCAGCGTTCTATTTATGTGACTTTCTTGCATACCAAGACACACTTTATGTTCACAGCAATAGACAATTCTTTATAAATTGTCTTATATCAGGAACTGTAGATTTCATATTTGGTAATTCAGCTGTTGTGCTACAAAATTGTGACATTCATGCTAGGCGTCCTAATGCAGGCCAAAAGAATATGCTCACTGCACAAGGTCGCACTGACCCTAACCAAAATACAGGAATTGTAATCCAAAAAAGTAGAATTGGTGCTACAAAAGATTTGGAACCTGTGAAGAGTAGTTTCCCAACATATCTTGGGAGACCATGGAAGGAATACTCTAGAACTGTAGTCATGCAATCAACTATAAGTGATGTTATTCAACCAGCTGGTTGGTTTGAGTGGGATGGGAATTTTGCTCTCAACACTTTATTTTATGGAGAATATCAAAACACTGGGCCAGGTGCTTCTACCTCTGGGAGGGTTAAATGGAAAGGGTATAAGGTCATTACTAGTGCCACTGAGGCCCAGACTTATACACCTAGGAATTTCATTGCAGGCTCTGGATGGTTGGGCTCTACTGGTTTTCCTTTCTCTTTGGACCTCTAG 1719 0.4159 MNYIKQAPPKKNNNKFFLALLATFLLATTVVGIVVGVITRRNSDDNTNSIIKSACSSTLYPELCFSTITSEPSSVTNKVSSHKDVILLSLNISTGTVERNYFTIKKLLNQKGRTKREKVALHDCLETIDESLYELKKAIDELKDYPSSKKSLFQHADDLKTLLSSAITNQETCLDGFSHDEACKRTRKNVEGGQVHVEHLCSNALAMVKNLTDTDMANDENNKMMVGTNNRKLKEEGEIKWPEWISAADRRLLQSSTVTPNVVVAADGSGNYKTVSAAVAAAPENSAKRYVIRIKAGVYKENVDVPKKKTNIMFLGDGRSNTIITASKNVFDGSTTFNSATVAAVGERFLAKDITFQNTAGPSKHQAVALRVGSDLSAFYLCDFLAYQDTLYVHSNRQFFINCLISGTVDFIFGNSAVVLQNCDIHARRPNAGQKNMLTAQGRTDPNQNTGIVIQKSRIGATKDLEPVKSSFPTYLGRPWKEYSRTVVMQSTISDVIQPAGWFEWDGNFALNTLFYGEYQNTGPGASTSGRVKWKGYKVITSATEAQTYTPRNFIAGSGWLGSTGFPFSLDL 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0313 572 Pfam Plant invertase/pectin methylesterase inhibitor 50 207 IPR006501 GO:0004857
Lal18g0313 572 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 48 212 IPR035513 -
Lal18g0313 572 Gene3D Invertase/pectin methylesterase inhibitor family protein 46 213 IPR035513 -
Lal18g0313 572 CDD PMEI-like_3 53 212 - -
Lal18g0313 572 Gene3D - 254 572 IPR012334 -
Lal18g0313 572 SUPERFAMILY Pectin lyase-like 256 571 IPR011050 -
Lal18g0313 572 SMART PMEI_2 46 207 IPR006501 GO:0004857
Lal18g0313 572 TIGRFAM PME_inhib: pectinesterase inhibitor domain 20 212 IPR006501 GO:0004857
Lal18g0313 572 ProSitePatterns Pectinesterase signature 1. 286 305 IPR018040 -
Lal18g0313 572 Pfam Pectinesterase 261 557 IPR000070 GO:0030599|GO:0042545
Lal18g0313 572 PANTHER PECTINESTERASE 13 571 - -
Lal18g0313 572 ProSitePatterns Pectinesterase signature 2. 405 414 IPR033131 -
Lal18g0313 572 PANTHER PECTINESTERASE 13 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0313 Lal-Chr18 2584362 2589020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0313 10 572 Carbohydrate Esterase AT3G14310 66.381 0.0 768
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0313 K01051 - jre:109004988 803.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0313 18 2584362 2589020 Lal18g0313 18 2584362 2589020 ECH
Lal22g0531 22 3537531 3541771 Lal18g0313 18 2584362 2589020 LSH