Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0309 ATGACAACTGATCATGAAGAAGATTTCAAGGATGAGAAGAATCCTCGCCCTCTCGATGAGGATGACATTGCTCTCCTCAAAACCTATGGCCTGGGACCTTATTCCACAAGTATAAAAAATGCAGAGAAGGAAATCAAAGATATGGCCAAGAAAGTCAATGATTTATGTGGTATCAAGGAGTCTGATACTGGTTTGGCTACGCCAAGCCAGTGGGATCTTGTTGCTGATAAGCAAATGATGCAAGAGGAGCAGCCTCTTCAGGTTGCAAGATGCACAAAGATTATAAATCCAAACTCTGAAGATGCTAAATATGTTATCAATGTGAAGCAGATTGCAAAGTTTGTTGTTGGGCTGGGGGATAAAGTTTCCCCCACTGACATAGAGGAAGGAATGCGTGTTGGGGTTGACAGAAACAAATATCAGATTCAGATTCCCTTGCCTCCAAAAATTGATCCCAGTGTTACTATGATGACAGTTGAAGAAAAGCCCGATGTCACTTATAATGATGTTGGTGGGTGTAAGGAGCAGATTGAAAAGATGCGAGAAGTTGTTGAACTACCCATGCTCCATCCAGAGAAATTTGTTAAGCTTGGAATTGATCCTCCGAAGGGTGTTCTTTGCTATGGTCCACCAGGAACTGGCAAAACGCTTCTAGCTAGGGCCGTGGCTAATAGAACTGATGCTTGTTTTATAAGGGTTATTGGAAGTGAGCTAGTTCAGAAATATGTTGGTGAGGGTGCTCGGATGGTCCGTGAACTATTTCAGATGGCCCGGTCAAAGAAGGCATGCATTGTGTTTTTCGATGAAGTGGATGCAATTGGAGGTGCTAGGTTTGACGATGGTGTTGGTGGTGATAATGAGGTTCAGCGCACAATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGTGGAAACATCAAAGTTTTGATGGCCACTAATAGGCCTGATACTCTAGATCCAGCACTACTAAGGCCCGGGCGATTGGACCGCAAAGTTGAGTTTGGCCTTCCCGATCTAGAGAGTAGAACACAGATATTCAAGATACATACAAGAACTATGAACTGTGAAAGGGATATCCGTTTTGAACTTTTAGCTAGACTTTGCCCAAATTCCACTGGAGCTGATATAAGGAGTGTTTGCACTGAAGCTGGTATGTATGCCATTCGAGCTCGAAGGAAGACGGTAACAGAGAAAGACTTCCTTGATGCAGTAAATAAAGTCATTAAAGGGTACCAGAAGTTCAGTGCAACCCCCAAGTATATGGTCTACAACTGA 1281 0.4325 MTTDHEEDFKDEKNPRPLDEDDIALLKTYGLGPYSTSIKNAEKEIKDMAKKVNDLCGIKESDTGLATPSQWDLVADKQMMQEEQPLQVARCTKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKVIKGYQKFSATPKYMVYN 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0309 426 Gene3D - 158 337 IPR027417 -
Lal18g0309 426 Gene3D - 339 420 - -
Lal18g0309 426 PANTHER 26S PROTEASE REGULATORY SUBUNIT 7 HOMOLOG A 6 424 - -
Lal18g0309 426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 416 IPR027417 -
Lal18g0309 426 Pfam ATPase family associated with various cellular activities (AAA) 205 337 IPR003959 GO:0005524|GO:0016887
Lal18g0309 426 Pfam AAA+ lid domain 360 403 IPR041569 -
Lal18g0309 426 CDD AAA 171 338 - -
Lal18g0309 426 SMART AAA_5 201 340 IPR003593 -
Lal18g0309 426 Gene3D - 32 157 IPR012340 -
Lal18g0309 426 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 6 424 - -
Lal18g0309 426 Coils Coil 38 58 - -
Lal18g0309 426 ProSitePatterns AAA-protein family signature. 308 326 IPR003960 GO:0005524|GO:0016887
Lal18g0309 426 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 98 409 IPR005937 GO:0005737|GO:0030163|GO:0036402
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0309 Lal-Chr18 2551262 2555699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0309 170 391 Calmodulin-binding Proteins AT3G56690 37.220 1.35e-41 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0309 K03061 - gmx:100808239 846.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0309 18 2551262 2555699 Lal18g0309 18 2551262 2555699 ECH
Lal22g0535 22 3574435 3578706 Lal18g0309 18 2551262 2555699 LSH
Lal20g1279 20 17257865 17261292 Lal18g0309 18 2551262 2555699 LSH
Lal1g1179 1 13037703 13041253 Lal18g0309 18 2551262 2555699 LSH