Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0305 ATGTGTGAAGAAGGGATTTTGCCAAGGATGGTTCTTAATGTTTTACTTGTTGAAGCTGATGATTCTACTCGTCAAATTATTTCTGCACTTCTTCGTAAATGCAACTACAAAGTTGCTGCAGTTTGTGATGGCTTAAAGGCATGGGAGACATTGAAGAATAAATCAGTTGACATAGATCTCATATTAACAGAAGTGGAGTTGCCATCAGTATCTGGATTTTCATTTTTATCTTTGATCATGGACCATGATATTTGCAAAAATATTCCGGTCATAATGATGTCTTCTCAAGATTCAGTTAGCATGGTGTTCCAATGCATGTTAAAAGGCGCAGCCGATTTTCTTATAAAACCTATTCGGAGGAATGAGCTCAGGAACTTGTGGCAGCATGTATGGAGAAGAACGAGTGCTAGCACTTGTACATCACCGTTTGTGGAAGCTGAGAGTTCATACATGGAAAATGTGCAGGATACATCCCAGCCCAAGAGTTCTTCAAATTGGAGCAATATCGAGCACAAAGAATCTAACAAATTTGAAAGGGAATCAGCGAAACATGACGATGAGGCTGCAAGGTGCAACAATACTCTTAAATCAATAGGTTTAAGGCTAGATCAGAGCTATGAATTCAAAGAACCTTGTAGAGAAGCTATTGACTTGATTGCTACATTTGAGAATTTTCCAACGAGCAGCCGTGAAAATTGTAGCTTCGATGGTGGTAACACAGACATGTTTGATTTTGATACACAATTGGAACTTTGTTCAAGAAAAGACTCTCCTGGCAGCACATGTAAACCTGCAATTGAGGATAGGCAAACATTGAACCACTCTAATGCTTCAGCCTTTTCTCGGTATAGCAGTAGTAAGTTGTTGCAGCCCCTTTTTCCAACATCATCGATCACTTCTGCTAAATTAACAGGCGCGGACTTGAATTCTCATGAATACCAAAAGTTATCTGAAAAGACAAATACTCCTCATCAATATGGTTGCAAAAATGAAAATCAGGAGAATATAACCACTCTGGTCATTGGTCAGTCTGAACAAATTGAACCAAAATTACAAAACAGACAACATGTATTCTTCCCTATTGCTGAGGTTACTATTGATCATAAGTCTGAAGGACATGGTAATTCTTTCACTTCCATGTTCTACACCCAATCAAGCGTCCAACCGATAATGACCCCGGAACAAATGTACCCAAAAGAGAGTTCTCCATTTCCCACAAGTACTTCACACCGGTCCAATTCTGAAAGTCACAGCATAGAATGTCATAACTCTTTAGATGGTGCCACTAATACTTCTGATCAAAATGTAAAGGATCAAAGCAAGTTGGATTGCACGACGAATGACTCTCCTAGCACTAGTCAGAGTGCTGGCACTGGTTTTAACTATAATGCTTCAAATCATAATAGTAGTGGTGCATATGGAAGCAGCATAGGTAGCGGAAGTGATCGAAATGATACTTCATCTGCTGTGATAGTCAAGAACAACCCTCCAAATTTTGATGATAGTTGTCATCATAGTTATGATGGACTCAAAGGAGCCGATTATTATCGAACCAGCCAAAGAGAAGCGGCTCTAGCAAAGTTTCGATTGAAGCGGAAAGATAGATGCTTTGATAAAAAGGTACGATATCAAAGCCGTAAAAGACTCGCAGAGCAACGCCCTCGTGTGAAAGGACAATTCGTTCGCCAAGTAAACAATGAAAATCAAATAGCAGAATCTTGTGGTGGCACCTGA 1734 0.3962 MCEEGILPRMVLNVLLVEADDSTRQIISALLRKCNYKVAAVCDGLKAWETLKNKSVDIDLILTEVELPSVSGFSFLSLIMDHDICKNIPVIMMSSQDSVSMVFQCMLKGAADFLIKPIRRNELRNLWQHVWRRTSASTCTSPFVEAESSYMENVQDTSQPKSSSNWSNIEHKESNKFERESAKHDDEAARCNNTLKSIGLRLDQSYEFKEPCREAIDLIATFENFPTSSRENCSFDGGNTDMFDFDTQLELCSRKDSPGSTCKPAIEDRQTLNHSNASAFSRYSSSKLLQPLFPTSSITSAKLTGADLNSHEYQKLSEKTNTPHQYGCKNENQENITTLVIGQSEQIEPKLQNRQHVFFPIAEVTIDHKSEGHGNSFTSMFYTQSSVQPIMTPEQMYPKESSPFPTSTSHRSNSESHSIECHNSLDGATNTSDQNVKDQSKLDCTTNDSPSTSQSAGTGFNYNASNHNSSGAYGSSIGSGSDRNDTSSAVIVKNNPPNFDDSCHHSYDGLKGADYYRTSQREAALAKFRLKRKDRCFDKKVRYQSRKRLAEQRPRVKGQFVRQVNNENQIAESCGGT 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0305 577 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 134 IPR045279 GO:0009736
Lal18g0305 577 PANTHER TWO-COMPONENT RESPONSE REGULATOR 211 555 IPR045279 GO:0009736
Lal18g0305 577 MobiDBLite consensus disorder prediction 152 183 - -
Lal18g0305 577 ProSiteProfiles Response regulatory domain profile. 13 131 IPR001789 GO:0000160
Lal18g0305 577 MobiDBLite consensus disorder prediction 395 503 - -
Lal18g0305 577 SUPERFAMILY CheY-like 12 135 IPR011006 -
Lal18g0305 577 PANTHER PRR RESPONSE REGULATOR 8 134 - -
Lal18g0305 577 PANTHER PRR RESPONSE REGULATOR 211 555 - -
Lal18g0305 577 SMART REC_2 12 127 IPR001789 GO:0000160
Lal18g0305 577 CDD psREC_PRR 14 117 - -
Lal18g0305 577 Pfam CCT motif 521 563 IPR010402 GO:0005515
Lal18g0305 577 Gene3D - 10 204 - -
Lal18g0305 577 ProSiteProfiles CCT domain profile. 521 563 IPR010402 GO:0005515
Lal18g0305 577 Pfam Response regulator receiver domain 14 125 IPR001789 GO:0000160
Lal18g0305 577 MobiDBLite consensus disorder prediction 399 501 - -
Lal18g0305 577 MobiDBLite consensus disorder prediction 152 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0305 Lal-Chr18 2513095 2516238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0305 520 564 Response Regulator Gene Family AT5G24470 84.444 6.32e-19 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Lal18g0305 Response_reg 1.5e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0305 K12130 - gmx:100779346 694.501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0305 18 2513095 2516238 Lal18g0305 18 2513095 2516238 ECH
Lal6g0607 6 3899340 3904568 Lal18g0305 18 2513095 2516238 ECH
Lal6g0607 6 3899340 3904568 Lal18g0305 18 2513095 2516238 LSH