Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0300 ATGATGGTTGTAGATTCGTTGATTTCTGGTCCTACTTCAGAAGCCATTTCTCAAATTATAGATACCATTGGTGAGTTTGTATATTGCGCTGCTGATGTACTTGTAAAGAAGGAAATTTTTAAGGAACTTGCAACTTACTTGGACCGAATTACACCGATCTTAAAAGAATTGAGGAAAGGAAAAGTCAGTGATTCTGAGACATTCAATCATGTCGTTGAGGTTCTGAATCGGGAAATTAATGAAGCAAAGAAACTTGCTCAAGAATGCAGCAAGAAGAGCAAGGTATATCTCCTAATGAATTCCAGATCCATTGTGCAGCATATAAAAAAGTACACGAGTGAAATCAGCAGGGTTATTAGTCTTCTTCCTTTGGCTGCATCGGATCTTTCTTTCGGAATAGTTGAAGAAATTGAAAAGCTATGTGACAATATGAAGGGAGCTGAGTTTAAAGCAGCCATAACAGAAGAAGAAATTTTAGATAAAATTGAGTCAGGGATATTGGAAAAGAATGTTGATCGCTCCTACGCAAATAATTTGATGGTTCTCATTGCAGAGGCTGTTGGCATTGAAAATGAGGGGTCAACAATGAAGAAGGAACTTGAAGAGTTCAAGAGTGAAATCGAAAATGCGCGGCTAAGGAAGGACCTCGCTGAAGCCATACAAATGGATCAGATCATTGCTTTGTTGGAAAGGGCTGATGCAGCTTCGTCTCCTAAGGAAAAGGAACTCAAGTACTTCGCTAAGCGCAAGTCTTTGGGAAGTCAGCCCTTGGAGCCTTTAAAGTCTTTTGTTTGCCCCATTACGCGGGATGTTATGGTCGATCCTGTAGAAACTTCATCGGGGCAAACATTTGAGAAAAGTGCAATAGAAAAGTGGTTCGCAGATGGAAACAATAAGTGTCCTCTGACCTTGATTCCTTTAGACACATCAATTTTGAGACCTAACAAAACCTTAAAACAATCAATAGAAGAATGGAAGAATAGAAATACGATGATCACAATTGGTTCAATGAGAGAAAATATACAGCCCGGAGATGATGATGAAGTACTGCTATGTTTGAGAACTATTCAAGAATTGTGTGAACAGAGCGACCAGCACATAGAATGGGTAATACTGGAGAATTACATACCAGTTCTTATCAAAATTCTTGCTTCAAAAAACCGTGATGTAAGGAACACTGCCCTTGCCATCCTATGCATGCTGGCGAAGGATAGTGAAGATGCTAAGGAAAGATTCGCAAATGTGGATAAAGCAATTGAGTCTGTAGTCCATTCTCTTGGACGTCGATCAGAGGAAAGGAAGTTGGGAGTGGCATTACTTCTGGAGTTATCCAAATATGATGTGTTAAGAGAACACATTGGAAAAGTTCAAGGTTGCATACTACTATTGGTGCCTATGTCTAGCAGTGATGACAATCAAGCTGCCAGAGATGCAACAGAGCTACTCGAGAAACTTTCCTACTCTGATCAGAATGTTATACAGATGGCGAAGACAAATTATTTCACGCACTTGTTGCAGCGTCTCTCCACAGGACCGGACGACGTGAAGATGACTATGGCGACAACGTTAGCAGAAATGGAGTTATCCGACCAAAATAAGGAGTCCTTGTTTGAGTGTGGTATACTGCCTCCTCTTCTTCACTTGGTCTCACATAATGATGTTCAGATGAAAACAGTGGCCCTTAAAGCTCTTCAGAATGTGTCCAGTTTAAAGAAGAATGGGCTTGAAATGATTCGACAAGGTGCAGCACGCCCATTGCTTGACATTCTTTTCAGGCAAAGCTTATCTTCAAGTTTGCGGGAACATGTAGCACCCGTTATTTTGCAACTTGCTGCATCAACCATCTCTCAAAATGCTGAGACACCAGTATTACTATTAGAATCTGATGATGATGTTTTTAACCTTTTCTCTCTTATTGACTACACTGGTTCTGACAATGTGCGACAATACACTATCCAGACATTTTATGCCTTGTGTCAGTCGCCATCAGCTTCATATATCAGGACCAAGCTAAGAGAGTACCCAGATGTGCGAGCATTGGTTAAGTTGTTTGAGAATGAAAACCTAAGTCTACGAGCAAGTGCCGTAAAGCTGTTTTCTTGCCTAGCAGAGAGTTGTGATGAAGCCATCATAGTGGAGAATGTGAATGAGAAGTGCATCAAGACTTTACTCCAGATCCTGAAATCTTCATCTGATGAAGAGGAAATTGTTTCTGCTATGGGAATAATATGCTATCTGCCAGAAATTCAGCAGATCACACAATGGCTCTTGGATGCTGGTGCACTATCGATCATTTACAAATGTATCCATGACGGGGACAGAGATCAAAAGAGAAAGTTGGTAGAGAATTCTGTTGGTGCGTTACGTCGTTTTACAGTTACAGAAAACTTGGAATGGCAAAGGAGTGCAGCTGAAACTGGGATTATAAATGTTTTAGTACAGCTTCTCGGAAGTGGAACAGCGATAACAAAACAACGTGCAGCATCGTCTCTTACTCAATTTTCTCGAAGTTCAAATCTTCTGAGCAGGCCACTGCCCAAGCGCAAGGGACTTTGGTGCTTCGCACCTCCAGCAGAACTTGGATGTTCAGTTCATGGAGGAATTTGTGCTGTGAAATCATCATTTTGCCTTTTGGAGGCTGATGCAGTGGAACCACTAACAAAGACTCTCGGAGAGACTAATCCCGGAGTTTGCGAGGCATCTTTAGATGCACTTCTAACATTAATTGAAGGTGAAAGACTGCAGAATGGCAGTAAAGTGCTTGCTAATGCAAACACGATACCGTTAATAATAAGACTTCTCGGTTCGCCATCTCTTGGATTGCAAGAAAAGTCTCTACATGCTTTGGAAAGGATTTTTCGGCTAGCTGAATTCACACAAAGATATGGAACCTCAGCTCAAGTACCTCTAGTTGAATTAACTCAGAGGGGTAATGGAAGCACAAGATCCATGGCTGCAAGAATATTGGCACATCTGGATGTGCTTCATGACCAATCTTCATATTTTTAG 3009 0.4114 MMVVDSLISGPTSEAISQIIDTIGEFVYCAADVLVKKEIFKELATYLDRITPILKELRKGKVSDSETFNHVVEVLNREINEAKKLAQECSKKSKVYLLMNSRSIVQHIKKYTSEISRVISLLPLAASDLSFGIVEEIEKLCDNMKGAEFKAAITEEEILDKIESGILEKNVDRSYANNLMVLIAEAVGIENEGSTMKKELEEFKSEIENARLRKDLAEAIQMDQIIALLERADAASSPKEKELKYFAKRKSLGSQPLEPLKSFVCPITRDVMVDPVETSSGQTFEKSAIEKWFADGNNKCPLTLIPLDTSILRPNKTLKQSIEEWKNRNTMITIGSMRENIQPGDDDEVLLCLRTIQELCEQSDQHIEWVILENYIPVLIKILASKNRDVRNTALAILCMLAKDSEDAKERFANVDKAIESVVHSLGRRSEERKLGVALLLELSKYDVLREHIGKVQGCILLLVPMSSSDDNQAARDATELLEKLSYSDQNVIQMAKTNYFTHLLQRLSTGPDDVKMTMATTLAEMELSDQNKESLFECGILPPLLHLVSHNDVQMKTVALKALQNVSSLKKNGLEMIRQGAARPLLDILFRQSLSSSLREHVAPVILQLAASTISQNAETPVLLLESDDDVFNLFSLIDYTGSDNVRQYTIQTFYALCQSPSASYIRTKLREYPDVRALVKLFENENLSLRASAVKLFSCLAESCDEAIIVENVNEKCIKTLLQILKSSSDEEEIVSAMGIICYLPEIQQITQWLLDAGALSIIYKCIHDGDRDQKRKLVENSVGALRRFTVTENLEWQRSAAETGIINVLVQLLGSGTAITKQRAASSLTQFSRSSNLLSRPLPKRKGLWCFAPPAELGCSVHGGICAVKSSFCLLEADAVEPLTKTLGETNPGVCEASLDALLTLIEGERLQNGSKVLANANTIPLIIRLLGSPSLGLQEKSLHALERIFRLAEFTQRYGTSAQVPLVELTQRGNGSTRSMAARILAHLDVLHDQSSYF 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0300 1002 CDD RING-Ubox_PUB 263 303 IPR045210 -
Lal18g0300 1002 Coils Coil 193 220 - -
Lal18g0300 1002 SMART Ubox_2 262 325 IPR003613 GO:0004842|GO:0016567
Lal18g0300 1002 Coils Coil 72 92 - -
Lal18g0300 1002 Pfam Armadillo/beta-catenin-like repeat 529 568 IPR000225 GO:0005515
Lal18g0300 1002 SUPERFAMILY RING/U-box 251 331 - -
Lal18g0300 1002 Gene3D - 12 126 IPR036537 GO:0007166
Lal18g0300 1002 Gene3D - 335 630 IPR011989 -
Lal18g0300 1002 Gene3D - 631 994 IPR011989 -
Lal18g0300 1002 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 239 334 IPR013083 -
Lal18g0300 1002 SMART arm_5 363 403 IPR000225 GO:0005515
Lal18g0300 1002 SMART arm_5 529 569 IPR000225 GO:0005515
Lal18g0300 1002 SMART arm_5 870 910 IPR000225 GO:0005515
Lal18g0300 1002 SMART arm_5 706 745 IPR000225 GO:0005515
Lal18g0300 1002 SMART arm_5 749 793 IPR000225 GO:0005515
Lal18g0300 1002 SMART arm_5 914 954 IPR000225 GO:0005515
Lal18g0300 1002 SMART arm_5 570 612 IPR000225 GO:0005515
Lal18g0300 1002 Pfam U-box domain 263 329 IPR003613 GO:0004842|GO:0016567
Lal18g0300 1002 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 13 1002 - -
Lal18g0300 1002 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842|GO:0016567
Lal18g0300 1002 SUPERFAMILY ARM repeat 334 997 IPR016024 -
Lal18g0300 1002 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 540 582 IPR000225 GO:0005515
Lal18g0300 1002 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 13 1002 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0300 Lal-Chr18 2466511 2473230 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0300 261 1002 U-box Gene Family AT1G76390 29.271 5.00e-64 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0300 - - gmx:100799969 1405.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0300 18 2466511 2473230 Lal18g0300 18 2466511 2473230 ECH