Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0299 ATGAGGCCAGTTTTCGTAGGGAACTTTGAATTTGATACCCGTCAATCAGAGCTTGAACGTTTGTTCTCAAAATATGGAAGGGTTGAACGGGTTGATATCAAATCTGGTTATGCTTTTGTCTATTATGAGGATGAACGAGATGCTGAAGATGCAATTCGTGTGCTTGACAATTTTCCATTTGGTTATGAGAAGCGAAGGCTGTCTGTGGAGTGGGCTAGGGGAGAACGTGGCCGCCATCCTAATGGTGCAAGGGAAAACCAGAGACCCACAAGAACCCTATTTGTTATCAATTTTGACCCAATTCGTACTAGAGATCGTGATATAGAAAGACACTTTGAACCTTATGGGAAGATTCATCATGTTCGAATTCGTCGGAATTTTGCATTTGTGCAGTTCGAAACACAAGAAGATGCTACTAAAGCTCTTGAGTGTACACATATGAGTAAGATATTGGACAGAGTAGTTTCTGTGGAGTATGCTCTAAGGGATGACAGTGAGAGGGGTGACAGATATCATGACAGTCCTAGAAGAGGCGGTTATGGTAGATCACCCAGTCCAGTTTATCGGAGGCGATCAAGTCCTGACTACGGTCGTCCACGCAGCCCTGTGTATGACAGGCGCAGGAGCCCTGATTATGGCAGGCCTAGGAGCCCTGAACATGGCAGGCCTAGGAGCCCTGAACATGGCAGGCATAGGAGCCCTGAACTTGGCAGGCCTAGGAGCCCTGAACATGGTAGATACCGCAGTCGTTCACCGATCCGGAGGTCAAGAACTTAA 777 0.4685 MRPVFVGNFEFDTRQSELERLFSKYGRVERVDIKSGYAFVYYEDERDAEDAIRVLDNFPFGYEKRRLSVEWARGERGRHPNGARENQRPTRTLFVINFDPIRTRDRDIERHFEPYGKIHHVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDSERGDRYHDSPRRGGYGRSPSPVYRRRSSPDYGRPRSPVYDRRRSPDYGRPRSPEHGRPRSPEHGRHRSPELGRPRSPEHGRYRSRSPIRRSRT 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0299 258 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 162 IPR000504 GO:0003723
Lal18g0299 258 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Lal18g0299 258 MobiDBLite consensus disorder prediction 165 258 - -
Lal18g0299 258 SUPERFAMILY RNA-binding domain, RBD 2 103 IPR035979 GO:0003676
Lal18g0299 258 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 225 - -
Lal18g0299 258 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 155 IPR000504 GO:0003723
Lal18g0299 258 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 60 IPR000504 GO:0003723
Lal18g0299 258 SUPERFAMILY RNA-binding domain, RBD 81 183 IPR035979 GO:0003676
Lal18g0299 258 SMART rrm1_1 92 158 IPR000504 GO:0003723
Lal18g0299 258 SMART rrm1_1 3 70 IPR000504 GO:0003723
Lal18g0299 258 MobiDBLite consensus disorder prediction 193 249 - -
Lal18g0299 258 Gene3D - 82 174 IPR012677 -
Lal18g0299 258 Gene3D - 1 81 IPR012677 -
Lal18g0299 258 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS31-RELATED 4 225 IPR029537 GO:0000398|GO:0005681
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0299 Lal-Chr18 2462230 2464981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0299 4 153 Eukaryotic Initiation Factors Gene Family AT4G34110 25.000 6.53e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0299 K12893 - gmx:100797709 408.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0299 18 2462230 2464981 Lal18g0299 18 2462230 2464981 ECH
Lal22g0566 22 3858890 3861994 Lal18g0299 18 2462230 2464981 LSH