Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0293 ATGGGAAGAGCCCCTTGTTGTTCTAAAGTTGGATTGCATAAAGGACCATGGACTCCAAGAGAAGATGCATTGCTCAATAAGTATATTCAAGTTCATGGTGAAGGTCAATGGAAATCACTTCCACAAAAAGCTGGGCTTTTAAGATGTGGAAAAAGTTGTCGATTAAGATGGATGAACTATTTGAGACCAAATATAAAGAGGGGTAATATAACTCCCGAAGAAGATGATCTTATAATTAGAATGCATTCACTTCTAGGAAATAGATGGTCTCTCATTGCAGGAAGGTTACAAGGACGAACCGATAATGAAATAAAAAATTATTGGAATACCTATCTAAGCAAAAAACAAAGAGATCGAGGAACAAATTCAAACACACATAAGAAGTTAATTGAGCCAACAAAGAAGAAAAGTGGTGGCAAGAAGAAAAATAAGTTGATGAATGACAAGAACCAAAGCACAAAAGTACAAGAACAAGAGAAGACTATAGTTTATGTACCAAAACCTATAAGGCTTACTTCTTTATCATCATCTATACCTTTAAATGATAGTATCCTTTCCTTGGATTCCAATGCAGCTAGTGTATCAACAAGCCAAGGAGAAAAAGAGATAAATGTGAGAGAAAATGAAGGGTTTGGATTTTTTGATGAAAATCATGATGGAGTCAATGGTTCTGATGAAAAGTTGGTGGAGCTCTTTGAAGAATACTTGGAGTTGTTTAATATGGAAAAGAGCCAAGATGGTTTGTATTCTTTTGCTGAATCTTTGTTGGTGTAG 774 0.3514 MGRAPCCSKVGLHKGPWTPREDALLNKYIQVHGEGQWKSLPQKAGLLRCGKSCRLRWMNYLRPNIKRGNITPEEDDLIIRMHSLLGNRWSLIAGRLQGRTDNEIKNYWNTYLSKKQRDRGTNSNTHKKLIEPTKKKSGGKKKNKLMNDKNQSTKVQEQEKTIVYVPKPIRLTSLSSSIPLNDSILSLDSNAASVSTSQGEKEINVRENEGFGFFDENHDGVNGSDEKLVELFEEYLELFNMEKSQDGLYSFAESLLV 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0293 257 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lal18g0293 257 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lal18g0293 257 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lal18g0293 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lal18g0293 257 CDD SANT 16 61 IPR001005 -
Lal18g0293 257 MobiDBLite consensus disorder prediction 115 153 - -
Lal18g0293 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lal18g0293 257 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lal18g0293 257 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 209 - -
Lal18g0293 257 CDD SANT 71 112 IPR001005 -
Lal18g0293 257 SMART sant 66 114 IPR001005 -
Lal18g0293 257 SMART sant 13 63 IPR001005 -
Lal18g0293 257 Gene3D - 14 66 - -
Lal18g0293 257 Gene3D - 69 161 - -
Lal18g0293 257 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lal18g0293 257 PANTHER MYB TRANSCRIPTION FACTOR 1 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0293 Lal-Chr18 2429940 2432908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0293 1 161 MYB Transcription Factor Family AT2G16720 57.143 1.01e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal18g0293 Myb_DNA-binding 1.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0293 K09422 - gmx:778044 330.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0293 18 2429940 2432908 Lal18g0293 18 2429940 2432908 ECH
Lal6g0627 6 4066090 4067511 Lal18g0293 18 2429940 2432908 LSH
Lal22g0569 22 3895537 3897771 Lal18g0293 18 2429940 2432908 LSH
Lal18g0293 18 2429940 2432908 Lal6g0627 6 4066090 4067511 PCT
Lal18g0293 18 2429940 2432908 Lal22g0569 22 3895537 3897771 PCT
Lal18g0293 18 2429940 2432908 Lal18g0293 18 2429940 2432908 PCT
Lal6g0627 6 4066090 4067511 Lal18g0293 18 2429940 2432908 PCT
Lal22g0569 22 3895537 3897771 Lal18g0293 18 2429940 2432908 PCT