Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0292 ATGGCACATCTGGGAAATACTGAAGCAGACACAGGTTTTGGAGATGATGATATATACACACAACTATGGAAGTTATGTGCAGGACCTTTGGTGGATGTTCCTCATGCTGAAGAAAGAGTTTATTACTTTCCTCAAGGTCACATGGAACAATTGCAAGCATCAACGAATCAAGAATTGAACCAGCAAATTCCCCATTTCAATCTTCCATCCAAGATTCTCTGTCGTGTTATGCACATTCAGCTGTTGGCTGAACAAGAAACTGATGAAGTTTATGCTCGTATCACTTTACTTCCAGAATCAGATCAAAATGAGCCTATAAGTCCTGATCCATGTCCACCTGAGACTCAGAAACAGATCTTTCACTCTTTTAGTAAGATATTAACTGCATCTGATACTAGCACTCATGGAGGATTTTCAGTTCTGCGTCGGCATGCTACTGAGTGCTTACCTCAATTGGACATGACACAACAAACTCCAACTCAAGAGTTAGCAGCCAAGGATCTTCACGGATTTGAGTGGAAGTTTAAGCATATTTTCAGAGAATATCGCCGTCTTTCTTTAGGGACTACTTCGGGTCAACCAAGGAGGCACTTGCTTACAACTGGATGGAGTACATTTGTCACATCGAAAAGATTGGTTGCTGGAGATGCTTTTGTGTTCTTAAGGGGTGAAAATGGTGAACTGCGAGTTGGTGTTAGGCGGCTCGCTCGGCATCAGAATCTGATGCCTTCATCTGTGATATCAAGCCAGAGCATGCATCTTGGAGTGCTTGCCACTGCTTCCCATGCTCTTATGACTCGTACCATGTTTGTGGTTTATTACAAACCAAGTATGACTCTTGATGCATGTAGGACTAGCCAGTTTATTATTGGTCTGAACAAATATTTAGAGGCAATTAAGAACAAGTTTTCTATTGGAATGCGCTTCAAGATGAGATTTGAGGTGGAGGACTCACCTGAAAGAAGGTTTTCCGGTACTATTGTCGGTGTTGGAGATGTATCTGCAGGATGGTCAAATTCTCAGTGGCGTTCAATGAAGGTTCAATGGGACGAACCAGCAACAATTCCCATGTCAGAGAGGGTTTCTGCTTGGGATTTGGAGCATTTTGTACCTTCTACTGCTGTAAATATCACTCAGCCTGTGGTGAAGAGCAAAAGATCTAGGCCTTCTGATGTTCAATCTTCTGAAGTTACTGCTAATTCTCCTGCTTCAACTTTCTGGTATCACGGGTCATCCTTGTCACATGAACCTACACAATTTGGTGGTGTTGGCAAAGTTCGAAGCAACGAAAACCACACCGTGTGGTCTTTGAGGCAGAAGGAAATTAATGGCAATCCAACGAATACCAATTCCAGCATCTCTAGAGTCTGTATGGAAGGACTATGGCCATCTTCAAACTATTTTCCTGAGATCAAAAACAACAAATCTGTTGCGGCGACACAATCATCTTGCGTTGTTAACCCCCCAGCTTCATCTAGGCCTAACAATGGTTCGATGCATGACCAATTTGACAATGGTAAAACGATGGAGAATCGCACGGATATCTGGGTATTTGGAGTTAATTTGAGTAACAATTTCACTAATGTTGAATTTCTTGAGAAGGAAGTTGAATGCCCAGCCATTGTTCCAAGTGATCCCAAAGATTCTGTTTCTATTGCTGCATGTGAAAGTGAGAATGGTCATAATCTCAATAATTCACTGTCCATGAACGAGCAGAGTCAAATTATTTCTGGTGCATCACCAAATGAGAGGCAGAACAAGCATACCTCTGTACCGTCGTTGAGGACTCGTACTAAGGTGCAAATGCAAGGTGTTGCAGTTGGTCGCGCTGTTGATTTGAACATGTTGAATGGTTATTGTGATCTAATAGATGAGCTTGAGAAATTATTTGATATTAAGGGAGAGCTTCATTCCAAAAACAAATGGTTGATTACTTATACCGACGATGAAAATGACACAATGCAAGTTGGTGATGATCGATGGCCGGAATTCTGTAACATGGTCAAGAGGATTTTCATTATCCCAAAGGAAGATGTGAAGAAGATAAAATCGAAGGATTCGGCCGCTTCATCGGAGATTGAAGAGAATTTGTTGAGCATAGATTTCACAGAATAG 2115 0.417 MAHLGNTEADTGFGDDDIYTQLWKLCAGPLVDVPHAEERVYYFPQGHMEQLQASTNQELNQQIPHFNLPSKILCRVMHIQLLAEQETDEVYARITLLPESDQNEPISPDPCPPETQKQIFHSFSKILTASDTSTHGGFSVLRRHATECLPQLDMTQQTPTQELAAKDLHGFEWKFKHIFREYRRLSLGTTSGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGENGELRVGVRRLARHQNLMPSSVISSQSMHLGVLATASHALMTRTMFVVYYKPSMTLDACRTSQFIIGLNKYLEAIKNKFSIGMRFKMRFEVEDSPERRFSGTIVGVGDVSAGWSNSQWRSMKVQWDEPATIPMSERVSAWDLEHFVPSTAVNITQPVVKSKRSRPSDVQSSEVTANSPASTFWYHGSSLSHEPTQFGGVGKVRSNENHTVWSLRQKEINGNPTNTNSSISRVCMEGLWPSSNYFPEIKNNKSVAATQSSCVVNPPASSRPNNGSMHDQFDNGKTMENRTDIWVFGVNLSNNFTNVEFLEKEVECPAIVPSDPKDSVSIAACESENGHNLNNSLSMNEQSQIISGASPNERQNKHTSVPSLRTRTKVQMQGVAVGRAVDLNMLNGYCDLIDELEKLFDIKGELHSKNKWLITYTDDENDTMQVGDDRWPEFCNMVKRIFIIPKEDVKKIKSKDSAASSEIEENLLSIDFTE 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0292 704 Pfam Auxin response factor 260 346 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lal18g0292 704 Gene3D - 120 235 IPR015300 -
Lal18g0292 704 Pfam B3 DNA binding domain 123 234 IPR003340 GO:0003677
Lal18g0292 704 ProSiteProfiles PB1 domain profile. 595 678 IPR000270 GO:0005515
Lal18g0292 704 CDD B3_DNA 121 234 IPR003340 GO:0003677
Lal18g0292 704 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 7 688 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lal18g0292 704 SUPERFAMILY CAD & PB1 domains 590 671 - -
Lal18g0292 704 PANTHER AUXIN RESPONSE FACTOR 11 7 688 - -
Lal18g0292 704 Gene3D - 591 683 - -
Lal18g0292 704 SMART B3_2 123 236 IPR003340 GO:0003677
Lal18g0292 704 ProSiteProfiles B3 DNA-binding domain profile. 123 236 IPR003340 GO:0003677
Lal18g0292 704 Pfam AUX/IAA family 587 678 IPR033389 -
Lal18g0292 704 SUPERFAMILY DNA-binding pseudobarrel domain 114 263 IPR015300 -
Lal18g0292 704 Gene3D - 302 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0292 Lal-Chr18 2421760 2426809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0292 14 682 B3 DNA Binding Superfamily AT4G23980 54.235 0.0 641
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lal18g0292 B3 7.6e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0292 K14486 - gmx:100820503 920.228
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0292 18 2421760 2426809 Lal18g0292 18 2421760 2426809 ECH
Lal3g1547 3 21214129 21218651 Lal18g0292 18 2421760 2426809 LSH