Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0291 ATGGACTCCTCGTCCGATCAACGGTGCAAGCGTTCTGCCGGCCCTAAGTGGCGGTGCAGCGCCACTGTGTCGCCGGGGAAATCGTACTGCGAAAAGCATTTATTGCAGCAGCGTAAAAATCAAATCGAGAAACACATAATTCGTGAGAACAAAGGCGAAGAAGAAAGTAAGAACGATAAGAATAAGAGAAAGAGAAGAACAGTGAAAAACATCGCCGATGATGATAGAAGTAGCGGATCGGAATTGGAAGCTTTGGAATCGGGATTTGGTGCGGAGAAAGGCGCCAATAGAAGGTCGAAGAAGATGAAGAAATTGATTGATCAAACTAAAGAAAATGAAGAAAGTGCTTCTGGAAAGGGATCGATGAATGTGTATCAGGTGAAAAAGGGTTCAAAACCTAAAAATGGAGCTCAAGATGCTAAAAAAGAGGGCTTATTGAAAAAAGCCGTGGAGGGTGGAAGCTTGATGTGTCATCAGTGCCAGCGAAATGATAAGAGTGGTGTTGTCAATTGCTCGAGTTGCAACAGAAGACGCTATTGTTATGAATGCATCAAGAACTGGTACCCAGGAAAAACCCGAGAGGAATTTGAGACTGTATGTCCATGTTGCTGGGGCAATTGCAACTGCAAAGCGTGCTTGCGGGAGGTTCCAGTGCTACCGCGCCCAGAAGTAAATGGCAGTGTCAAATTACAACGACTGCTATACTTACTATGTAAAGCTCTGCCAGTTCTGAGGCATATTCACAGGGAGCAGAACCTCGAATTAGAGATTGAAACCAAAATTAAGGAGTTAGGTAACCAGCTGCAAGAAATTGACATAACAAGAACAAAGCTACATGAACGTGAGCGCATTGACAATTGCAATACATCAATAATTGGGCTTTTCCGAAGCTGCCCCAACCCCAGTTGCTCTTATGATCTATGTCTCATGTGCTGTCAGGAGCTCAGAGATGGCTGCCAACCTGGAGGCATAGAAGCTGAAACATCTCATGAACAATTTGCAGGGAGAGCTCGTCATGATTCAACAAGAAATCAGAGTAAAAATGACCATCGTAAAAAATATGGGTGGGAGAGCCAACTGGAACCTACTAATATTGATTTTCAAGATAACCCGTCCTCTCCCTTCCCTGAATGGGAAGCTAATTGTGATGGTAGCATTCCATGCCCTCCGAAACAGCGTGGAGGTTGTGGTACTAAATTTCTAGAACTGAGACGCATTTTCAAAGCTAATTGGGTTGGGAAACTGCTAAATAATGCTGAGGATCTCACTAGAGACTACACCCCACCAAGTGTTGATATTACTGAAGAGTGTTCTTTGTGCCAACCAAAGTTGGTTGAAGGAAAAATCAATCTTCAAATCCGGAGGGCAGCGTGCAGGAATGGCAGTAATGATAACTTCTTGTATTGCCCAAATGCCCTTGACATTTCTGATGATGAGATTGAGCATTTCCAGAAGCACTGGATGAGGGGAGAACCTGTGGTTGTGAGAAATATTCTGGACAAAACATCTGGTCTTAGTTGGGAACCAATGGTTATGTGGAGGGCTTTGAGAGAAACAGGTTCCAATGTGAAGTTCAAAGAGGAAACACGAAGTGTAACAGTCATTGATTGCCTCGACTGGTGTAGGCTTGAGATTAATATTCACCAATTTTTCAAAGACTACCTAGAGGGTCGAAAGCATAAAAATCAGTGGCCAACAATATTGAAATTGAAAGATTGGCCTTCATCGACCTCTTTTGAAGAACGTTTGCCCAGGCATGGCGCTGAATTCCTTAGTGCACTCCCCTACAAGGACTACACTGACCCAAAATCTGGTCTTTTAAATTTTGCCACTAAACTTCCTGAGAGCTCGCTCAAACCAGATATGGGACCCAAAACATATATTGCTTATGGATTTTCTGAAGAGCTTGGTAGAGGAGATTCTGTGACAAAGCTGCACTGTGACGTGTCTGATGCGGTCAATGTGTTGACACACACAACCAAGGTGAAAATAGCTCCCTCCCAGAGAGAGGAAATAAAAAAATTGAAGAAGAAATATGCTAAAGAAGACTCTCGTGAGCTTTTTGGTGAAGCATTAGGTGATGTTGGCGGAAGACCTAAATCTAAAGCATCGAGTCGTGATCAAAATGGTGAGAACTTGGTCAACCGAATTTTACCAAATAACCAAATGGATCGATGCATTTTTTCTAGAGCTGAAGACAGGGGTGGGAAATTAGAAACTGGGAACAATGAACAATGTGAAGTGAACATAGCCTGCTCTCGCACATGCAGAAATGACACTGAAAGGAGTTCATCTGTGGAAGATGGTGTTAGTATAACATCTACTGAAGTTTCAGATGATTCTAGAATTTTCAACCAGGAACATGTTCAGTCTGCAAGTAGCTCAGCTTCAAGTAATACGAACAATAAGAAAGACCGAATGAGGATTGATCTTCTAGATGATAATGTGTCTGGTATTCTCGAGTTAAGAGAGACAAAACAAGGCCGGCAAAAAGATTCATTGGAAACTAAAAGTGAAGCCGAGTTAGCCCTTGGTGGTGCTGTTTGGGACATCTTCCGCCAGCAAGATGTCCCAAAGCTAATTGAGTATCTAAGAAAGCACCAGAAGGAATTCCGTCATCTCTACAATCTTCCTGTAGATTCTGTTATACACCCCATTCATGACCAGACTCTGTTCTTAAATGAGAGACATAAGAAACAACTGAAAAGGGAGTTTAATGTTGAACCATGGACTTTTGAGCAACACCTTGGTGAGGCTGTTTTCATTCCAGCGGGATGTCCTCATCAAGTCAGAAACAGACAAGTCAAAAAACTGACCCTCTATGCTGTAAGTGCGGCTGTTAGAGAAGTCAAACAACTTATGACTGCCAATGAGTAA 2877 0.4279 MDSSSDQRCKRSAGPKWRCSATVSPGKSYCEKHLLQQRKNQIEKHIIRENKGEEESKNDKNKRKRRTVKNIADDDRSSGSELEALESGFGAEKGANRRSKKMKKLIDQTKENEESASGKGSMNVYQVKKGSKPKNGAQDAKKEGLLKKAVEGGSLMCHQCQRNDKSGVVNCSSCNRRRYCYECIKNWYPGKTREEFETVCPCCWGNCNCKACLREVPVLPRPEVNGSVKLQRLLYLLCKALPVLRHIHREQNLELEIETKIKELGNQLQEIDITRTKLHERERIDNCNTSIIGLFRSCPNPSCSYDLCLMCCQELRDGCQPGGIEAETSHEQFAGRARHDSTRNQSKNDHRKKYGWESQLEPTNIDFQDNPSSPFPEWEANCDGSIPCPPKQRGGCGTKFLELRRIFKANWVGKLLNNAEDLTRDYTPPSVDITEECSLCQPKLVEGKINLQIRRAACRNGSNDNFLYCPNALDISDDEIEHFQKHWMRGEPVVVRNILDKTSGLSWEPMVMWRALRETGSNVKFKEETRSVTVIDCLDWCRLEINIHQFFKDYLEGRKHKNQWPTILKLKDWPSSTSFEERLPRHGAEFLSALPYKDYTDPKSGLLNFATKLPESSLKPDMGPKTYIAYGFSEELGRGDSVTKLHCDVSDAVNVLTHTTKVKIAPSQREEIKKLKKKYAKEDSRELFGEALGDVGGRPKSKASSRDQNGENLVNRILPNNQMDRCIFSRAEDRGGKLETGNNEQCEVNIACSRTCRNDTERSSSVEDGVSITSTEVSDDSRIFNQEHVQSASSSASSNTNNKKDRMRIDLLDDNVSGILELRETKQGRQKDSLETKSEAELALGGAVWDIFRQQDVPKLIEYLRKHQKEFRHLYNLPVDSVIHPIHDQTLFLNERHKKQLKREFNVEPWTFEQHLGEAVFIPAGCPHQVRNRQVKKLTLYAVSAAVREVKQLMTANE 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0291 958 SUPERFAMILY Clavaminate synthase-like 480 933 - -
Lal18g0291 958 ProSiteProfiles Zinc finger RING-type profile. 157 203 IPR001841 -
Lal18g0291 958 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN-CONTAINING PROTEIN 11 934 - -
Lal18g0291 958 Pfam JmjC domain, hydroxylase 844 933 IPR003347 -
Lal18g0291 958 ProSiteProfiles JmjC domain profile. 602 958 IPR003347 -
Lal18g0291 958 MobiDBLite consensus disorder prediction 331 355 - -
Lal18g0291 958 Pfam WRC 7 43 IPR014977 -
Lal18g0291 958 MobiDBLite consensus disorder prediction 788 807 - -
Lal18g0291 958 MobiDBLite consensus disorder prediction 758 783 - -
Lal18g0291 958 MobiDBLite consensus disorder prediction 788 802 - -
Lal18g0291 958 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 11 934 IPR045109 GO:0032454|GO:0033169
Lal18g0291 958 MobiDBLite consensus disorder prediction 1 24 - -
Lal18g0291 958 MobiDBLite consensus disorder prediction 330 355 - -
Lal18g0291 958 MobiDBLite consensus disorder prediction 41 81 - -
Lal18g0291 958 MobiDBLite consensus disorder prediction 41 140 - -
Lal18g0291 958 SMART cupin_9 583 951 IPR003347 -
Lal18g0291 958 Gene3D Cupin 768 953 - -
Lal18g0291 958 Gene3D Cupin 467 719 - -
Lal18g0291 958 MobiDBLite consensus disorder prediction 93 114 - -
Lal18g0291 958 MobiDBLite consensus disorder prediction 690 716 - -
Lal18g0291 958 ProSiteProfiles WRC domain profile. 3 48 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0291 Lal-Chr18 2376740 2395866 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lal18g0291 JmjC 2.1e-12 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0291 K15601 - vvi:100258626 985.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0291 18 2376740 2395866 Lal18g0291 18 2376740 2395866 ECH