Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0290 ATGGAATCAAGTAGCATTGATAGCAATATATTGTCTTTGAGTATGTTGGAAGAAGATGAACATAGCCATCATCAATTTTCTTCAATCTCAAAGTTACATAGCAATGTTCCAACCACTACAAGTGTTCATGACCTTCTTGAGTGCCCTGTTTGCACCAATTCAATGTACCCTCCAATCCATCAGTGCCACAATGGACATACCCTTTGTTCGACATGTAAGTCAAGGGTACACAACAGGTGCCCAACTTGTAGACAGGAACTTGGTGATATAAGGTGTCTGGCATTGGAGAAGATAGCAGAATCACTTGAACTTCCTTGCCGATACATCTCTCTTGGGTGCCCGGAGATATTTCCGTATTACAGCAAACTCAAACATGAGGCTATTTGTAACTTCAGACCCTATAACTGTCCTTATGCTGGTTCAGACTGCTCTGCTGTTGGAGATATTCCATACCTTGTTGCTCATTTAAGGGATGACCATAGGGTTGATATGCATTCGGGATGCACTTTCAATCATCGCTATGTCAAGTCTAATCCCATGGAAGTAGAAAATGCTACGTGGATGCTTACGGTCTTCCACTGTTTTGGTCAGTATTTTTGTCTCCATTTTGAAGCCTTTCAGCTTGGTATGGCACCTGTTTACATGGCTTTCCTCCGTTTCATGGGCGACGAAAGAGAGGCACGGAACTACAGCTACAGCCTGGAGGTAGGAGGAAATGTACGGAAACTAACGTTCGAAGGGAGTCCAAGAAGCATTCGAGATAGCCATAAAAAAGTCAGAGACAGTCATGACGGCCTCATCATATACCGGAACATGGCGCTTTTTTTCTCGGGTGTGGATAGGAAAGAGTTGAAGCTAAGAGTAACAGGAAGGATATGGAAAGAACAGCAAAACCCTGATGGTGGAGTATGCATACCCAACATGTGTGCTTAG 933 0.4352 MESSSIDSNILSLSMLEEDEHSHHQFSSISKLHSNVPTTTSVHDLLECPVCTNSMYPPIHQCHNGHTLCSTCKSRVHNRCPTCRQELGDIRCLALEKIAESLELPCRYISLGCPEIFPYYSKLKHEAICNFRPYNCPYAGSDCSAVGDIPYLVAHLRDDHRVDMHSGCTFNHRYVKSNPMEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDEREARNYSYSLEVGGNVRKLTFEGSPRSIRDSHKKVRDSHDGLIIYRNMALFFSGVDRKELKLRVTGRIWKEQQNPDGGVCIPNMCA 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0290 310 CDD RING-HC_SIAHs 46 84 - -
Lal18g0290 310 ProSiteProfiles Zinc finger SIAH-type profile. 101 161 IPR013010 GO:0008270
Lal18g0290 310 Pfam Seven in absentia protein family 90 289 IPR018121 GO:0005737|GO:0006511|GO:0007275
Lal18g0290 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 156 IPR013083 -
Lal18g0290 310 ProSiteProfiles Zinc finger RING-type profile. 48 84 IPR001841 -
Lal18g0290 310 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 163 289 IPR008974 GO:0005515
Lal18g0290 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 100 IPR013083 -
Lal18g0290 310 SUPERFAMILY TRAF domain-like 101 293 - -
Lal18g0290 310 SUPERFAMILY RING/U-box 42 88 - -
Lal18g0290 310 PANTHER UBIQUITIN LIGASE SINAT3 1 302 - -
Lal18g0290 310 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 302 - -
Lal18g0290 310 CDD Sina 162 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0290 Lal-Chr18 2369167 2372173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0290 3 296 C3H Transcription Factor Family AT2G41980 71.429 8.88e-160 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0290 K04506 - gmx:100782764 620.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0290 18 2369167 2372173 Lal18g0290 18 2369167 2372173 ECH
Lal5g0045 5 514328 517531 Lal18g0290 18 2369167 2372173 LSH