Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0286 ATGGAATCCACCGATATGAAGATCTACAATCTCTTCGTCAAACACTTAAATGGCAAAACCCTAACCCTAAAATTCCAATCCCCGAACATCTCCCCTTATTCCATAAAGCACCGCCTTTTCCACCTCACCGGAATCCCCCCACACCACCAGCGTCTCCTCACCGGAACCCGCCACTTCTCCGACGCCGAAACCACCACCACCACCCTCTCATGCTCACACAACAGCAACACCTTCCCCACCGTCCACCTCCTCCTCCGCCTCAACGGCGGGAAGGGAGGGTTCGGATCACTCCTCCGTGGCGCTGCCACGAAGGCGGGGCAGAAAAAGACGGACAATTTTGATGCGTGCCGCGACATGAGTGGGAGGAGGCTGAGGCATGTGAACGCAGAGAAGAGGTTGCAGGAGTGGAGGGAGACGGAGGAGGAGAGGAAATTGGAGAAGGTGGCGGAAGAGTTTTTGAAGAAACAGATGAAGAAAGGGAAGAAAGGGAAAGGTGATGGAGAGGCACATAAGTATGTGGCTAAGTATAGGGAGGAGAGTGACAAGTGTGTTGCTGATGTGGCGCTTTCGGTGAAAGAAGCGTTGATGAATGGTAATAATGGTAAGAGGAAGGGAGAAGAATTTGGGAAAGGTGATGCTAAGAAGTTGAAGATATGGATGGGGAAGAGAAAAATGAATGAAAGTGACAGTGATTATTCCAGTGGAGAAGAGAATGATAATGAGAGGGAAAAAGAGAAATCCATTTTATTAAATAGCCAGGACTCAAACAAGGATGAAGGAAGTTCAGGTTCAGTGACTGATCATAAACAGGGTGTAGACTCTTCAGGTGCAGGCTCATGTGAAAGTGGATCTGAAGAAGAGAAAGAAACTGTTGTAGAAGTCAAAGTGGAATCTATTGGACCACAAAGTAGTGATACTGATCAGGTGAAACTGGGTAATGCTGTTGAGCCTGTGTCATGTGATGAGATGGTGAAGCCTGTGGATATGGTTTATTCAGAGTCGGTAGTTTCCGGATTTAGTGCTGAAGATAATGGACATCATGATGGCAATGGGGTTGTCTCTGACAAGCTTGATGGATTACTAAGTGTAGCCCCAAATATTACAAGCTCAGAAAATGTGAAGGGTGCAAACAAATGTATGGAAGTTGATCTTGAGAATAAAACTTCTGTAAATGAAGAAACCCCACCAAGCATTCCAACATTAGAAGAGCCTCTGAATTTTGATGCTTTTACTTCAGCTGCAGAACTTGAGGTTCTTGGTATGGAAAGGTTGAAGTCTGAACTGCAATCACGTGGGTTAAAATGTGGAGGTGCTTTGCAGGAACGTGCTGCCAGGCTTTTTCTTTTAAAATCTACCCCACTGGATAAACTTCCAAAGAAGCTGCTTGCAAAGAAATGA 1398 0.4599 MESTDMKIYNLFVKHLNGKTLTLKFQSPNISPYSIKHRLFHLTGIPPHHQRLLTGTRHFSDAETTTTTLSCSHNSNTFPTVHLLLRLNGGKGGFGSLLRGAATKAGQKKTDNFDACRDMSGRRLRHVNAEKRLQEWRETEEERKLEKVAEEFLKKQMKKGKKGKGDGEAHKYVAKYREESDKCVADVALSVKEALMNGNNGKRKGEEFGKGDAKKLKIWMGKRKMNESDSDYSSGEENDNEREKEKSILLNSQDSNKDEGSSGSVTDHKQGVDSSGAGSCESGSEEEKETVVEVKVESIGPQSSDTDQVKLGNAVEPVSCDEMVKPVDMVYSESVVSGFSAEDNGHHDGNGVVSDKLDGLLSVAPNITSSENVKGANKCMEVDLENKTSVNEETPPSIPTLEEPLNFDAFTSAAELEVLGMERLKSELQSRGLKCGGALQERAARLFLLKSTPLDKLPKKLLAKK 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0286 465 Pfam Replication stress response SDE2 C-terminal 398 464 - -
Lal18g0286 465 Pfam Silencing defective 2 N-terminal ubiquitin domain 9 156 IPR024974 -
Lal18g0286 465 MobiDBLite consensus disorder prediction 253 281 - -
Lal18g0286 465 PANTHER REPLICATION STRESS RESPONSE REGULATOR SDE2 10 464 - -
Lal18g0286 465 PANTHER SPLICING FACTOR SF3A-RELATED 10 464 - -
Lal18g0286 465 MobiDBLite consensus disorder prediction 220 252 - -
Lal18g0286 465 Gene3D - 7 95 - -
Lal18g0286 465 SUPERFAMILY Ubiquitin-like 3 88 IPR029071 -
Lal18g0286 465 MobiDBLite consensus disorder prediction 220 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0286 Lal-Chr18 2342904 2349700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0286 398 464 C2H2 Transcription Factor Family AT5G06160 46.269 2.84e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0286 K25059 - gmx:100781694 415.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0286 18 2342904 2349700 Lal18g0286 18 2342904 2349700 ECH
Lal5g0040 5 482788 485365 Lal18g0286 18 2342904 2349700 LSH