Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0285 ATGAATGCAAAGGGACTTAGATTTGTAAGATTTGAGGATTGGAAATCAGAGTCATCTTTTAGTATAGACCAAGAGGGTTCAGTTGATAATGGAATTCATCATAAAAAGAGAAATAGAGCAAGTGTATATATTGGAACAAAATTGGACAGTGTGATAGAGAAGATGAAGAACTTGAAAAAAGGTGCAACTGTTCATCCTATAAGTGCTTCTGGACAAACTAAAAAAGTGGCTTCAAAGAACAAAATTCTTGATCCACAAGGGGAAGTTCTTCAGAAATGGAACAAAATTTTTGTAATAACATGTGTGATGGCTATCTCTGTCGATCCGGTGTTCTTTTACATTCCTGTGATCAAGGAGAAAGATAAATGTCTGGATTTGGATGGAGCATTGCAAATTATTGCTAGTGTTCTTCGAACATTCTTCGATATCTTTTACATTCTTCGCATAATCTTTCAGTTTCGTACAGCGTTTGTCGCTCCTTCTTCTCGTGTTTTTGGAAGAGGAGAGCTTATTGATGATCCTGTGGCTATCATTAAAAGATACTTATGTTCTCACTTCATTATTGACATTCTATCAATTATTCCACTTCCACAGGTGGTTGTTTTAGCTATAATTCCAAACATTAAAAACTCAGTTCCATTTGTTGCAAAGGATTTGCTGAAGTATATAGTATTAATCCAATATTTGCCAAGACTTTTGAGGATCTATCCATTATTCAAAGAAGTAACTAGAACTTCTGGCATATTGACCGAGACAGCATGGGCTGGAGCTGCATATAATCTTTTTCTCTATATGCTTGCAAGTCATGTGGTTGGAGCAAATTGGTATCTACTTTCGGTAGAATCAGAGGTGCGGTGCTGGAGCCGAGAGATGAAGAATGCTTCGATCTATCATGAATCATACTTGGGCTGTGGATTCCGGAACCAAACTGTCATACAACTTCTTAATAGTACTTGCTCTTTTGTTGACCCTGACCAAATCAATGGCCTAAGTGCCTTCAATTTTGGAATATATTTTGAAGCTCTAGGATCAGGGGTGGTAGAATCAACAACAGATTTTCCTCAGAAGTTCTTCTACTGCTTTTGGTGGGGTTTGCGAAACTTAAGTTCTCTAGGACAAAACCTCAAGACTAGTACCTATGTCCCAGAGATAACCTTTGCTATCTTCATTGCTGTCTTTGGATTGGTTTTATTCTCATTGCTTATTGGAAACATGCAGAAATATCTGCAATCTACAACTGTTAGAGTTGAAGAGATGAGAGTGAAGAGGCGAGACACAGAACGATGGATGTCCCACCGTATGCTACCTGCGAAGTTGAAGGAAAGAGTGAGACGATATGAACAATACAAATGGCAAGAAAACCGGGGTGTCGAGGAGGAGAAATTAATTTGTAACCTCCCTAAAGATCTCAGAAGGGACATAAAGCGCCATCTTTGCTTAGCTTTGGTTAAAAAAGTGCCAATGTTTGAGAAAATGGATGAGCAATTGTTGGATGCAATGTGTGATAGATTGAAGCCTGCCCTTCATACAGAGAAGAGTTACATTGTTCGCGAAGGAGATCCGGTTGATGAAATGCTCTTCATTATACGCGGAAACCTTGCAAGTATGACAACAAATGGTGGAAGAACTGGTTTCTTCAACTCTTTACTTCTCAAAGCTGGTGACTTCTGTGGAGAAGAGCTTTTAACATGGGCATTGGATCCTAACTCATCCTCAAATCTACCAATTTCAACTAGAACAGTAGAAACTATATCAGAAGTCGAAACCTTTGCTCTCATGGCTGATGACTTAAAACTTGTTGCTTCTCAATTTCGTCGTCTTAACAGTAAACAGATCCAACATACTTTCAGGTTCTATTCCATGCAATGGAAAACATGGGCTGCATGTTTCATACAAGTAGCTTGGCGTGGATACAGGAAAAAGAAAATCGAGAGGTCATTGCGTGAAGCCGAAGATAGGCTACAAGATGTTTTAGCAAATGAGGGTGGGAATTCAATAAGCCTTGGTGCAACCATGTATGCATCAAAGTTTGCTGCAAATGCATTAAGAAACTTAAGAGAAAATAGGGAACGCAAAAGATTGCCACAAAGACTATTACCTCTATTACCTCCAAAGCCAGCTGAACCAGATTTCACAACTCAGAATGACTAG 2151 0.3887 MNAKGLRFVRFEDWKSESSFSIDQEGSVDNGIHHKKRNRASVYIGTKLDSVIEKMKNLKKGATVHPISASGQTKKVASKNKILDPQGEVLQKWNKIFVITCVMAISVDPVFFYIPVIKEKDKCLDLDGALQIIASVLRTFFDIFYILRIIFQFRTAFVAPSSRVFGRGELIDDPVAIIKRYLCSHFIIDILSIIPLPQVVVLAIIPNIKNSVPFVAKDLLKYIVLIQYLPRLLRIYPLFKEVTRTSGILTETAWAGAAYNLFLYMLASHVVGANWYLLSVESEVRCWSREMKNASIYHESYLGCGFRNQTVIQLLNSTCSFVDPDQINGLSAFNFGIYFEALGSGVVESTTDFPQKFFYCFWWGLRNLSSLGQNLKTSTYVPEITFAIFIAVFGLVLFSLLIGNMQKYLQSTTVRVEEMRVKRRDTERWMSHRMLPAKLKERVRRYEQYKWQENRGVEEEKLICNLPKDLRRDIKRHLCLALVKKVPMFEKMDEQLLDAMCDRLKPALHTEKSYIVREGDPVDEMLFIIRGNLASMTTNGGRTGFFNSLLLKAGDFCGEELLTWALDPNSSSNLPISTRTVETISEVETFALMADDLKLVASQFRRLNSKQIQHTFRFYSMQWKTWAACFIQVAWRGYRKKKIERSLREAEDRLQDVLANEGGNSISLGATMYASKFAANALRNLRENRERKRLPQRLLPLLPPKPAEPDFTTQND 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0285 716 ProSiteProfiles IQ motif profile. 624 653 IPR000048 GO:0005515
Lal18g0285 716 Coils Coil 640 660 - -
Lal18g0285 716 SMART cnmp_10 488 619 IPR000595 -
Lal18g0285 716 Gene3D Jelly Rolls 486 606 IPR014710 -
Lal18g0285 716 ProSiteProfiles cAMP/cGMP binding motif profile. 488 572 IPR000595 -
Lal18g0285 716 CDD CAP_ED 488 619 IPR000595 -
Lal18g0285 716 Gene3D Helix hairpin bin 415 479 - -
Lal18g0285 716 SUPERFAMILY cAMP-binding domain-like 417 607 IPR018490 -
Lal18g0285 716 Pfam Ion transport protein 93 416 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lal18g0285 716 Gene3D - 95 412 - -
Lal18g0285 716 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 7 714 - -
Lal18g0285 716 SUPERFAMILY Voltage-gated potassium channels 84 410 - -
Lal18g0285 716 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 7 714 - -
Lal18g0285 716 MobiDBLite consensus disorder prediction 693 716 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0285 Lal-Chr18 2337161 2341985 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0285 1 715 Ion Channels AT5G53130 62.465 0.0 908
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0285 K05391 - gmx:100797784 1114.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0285 18 2337161 2341985 Lal18g0285 18 2337161 2341985 ECH