Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0283 ATGGCAGATTCTGATGAAGTTGCAAAATCTGAAAACCAGCAAACAGAGCAAGTGTGTAGTTTCTTCAGAAAACCTGTTAATAAAAAGAATATAAGGAAGCGGACTGTTGATGATGAAGATGATGATGAGGATTCCAGGAAGGAAAGCTCTTTATTACATATTCAGAAAAAGACCTTGAAGCCTGACAATAAGTTGTACTTTTCCTCCAGCGCCTCAAAAAGTTCCGCATCTGCTGAACCAAGCGAAGAATCTGAAAAACCAGGTTTTCACTTTGAGTCTTCCAGAGAGGTTCAAGTTCAACATGATAATAAAGCAACAGCAACTTTAGAGACTGAGACTGATTTTTCGAGAGATGCTCGTGCCATCCGTGAAAGAGCACTTAAGCAAGCTGAACAGAGTCTGAAGGGGAAAGGCACTAGTTCTGAGGGGGGTGATAAATTGTATAAGGGACTCAACAGTTACAAAGATTACAAGGCTGGCTTTCGTAGAGAGCAAACAATTGCTAGTGAAAAGGCTGGTGGGTCACATGGTCCTCTCAGGGCTTCAGCTCATATTAGAGTTTCGGCAAGATTTGATTATCAACCTGACATATGTAAGGATTACAAGGAGACTGGTTACTGTGGGTATGGTGATTCATGTAAGTTTATGCATGATCGAGGGGATTACAAGTCGGGGTGGCAGATGGAGAAGGAATGGGAAGAAGCTGAGAAAGCAAGAAAGATGAGATTGGCTGCAGGTGAGGATGCGGAAGAGGAGGGAGCTAGTTTGACTGATGAAGATGACGAGGATGCATTACCATTTGCATGTTTCATTTGCAGAAATCCTTTTGTGGATCCTGTTGTGACCAAGTGCAAGCACTACTTCTGCGAGCATTGTGCATTGAAGCATCATGCAAAGAATAAGAAGTGTTTTGTCTGCAACCAGCCAACTCTTGGCATTTTTAACGTTGCTCAGGAGATAAGGCGGAAGACGGCAGAGGATAAATGA 987 0.4276 MADSDEVAKSENQQTEQVCSFFRKPVNKKNIRKRTVDDEDDDEDSRKESSLLHIQKKTLKPDNKLYFSSSASKSSASAEPSEESEKPGFHFESSREVQVQHDNKATATLETETDFSRDARAIRERALKQAEQSLKGKGTSSEGGDKLYKGLNSYKDYKAGFRREQTIASEKAGGSHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWEEAEKARKMRLAAGEDAEEEGASLTDEDDEDALPFACFICRNPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNVAQEIRRKTAEDK 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0283 328 ProSiteProfiles Zinc finger RING-type profile. 269 307 IPR001841 -
Lal18g0283 328 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE 10 327 - -
Lal18g0283 328 MobiDBLite consensus disorder prediction 79 99 - -
Lal18g0283 328 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 193 218 IPR000571 GO:0046872
Lal18g0283 328 SUPERFAMILY CCCH zinc finger 191 223 IPR036855 GO:0046872
Lal18g0283 328 SMART c3hfinal6 192 219 IPR000571 GO:0046872
Lal18g0283 328 CDD RING-HC_RNF113A_B 267 307 - -
Lal18g0283 328 SMART ring_2 269 306 IPR001841 -
Lal18g0283 328 SUPERFAMILY RING/U-box 268 311 - -
Lal18g0283 328 Pfam Zinc finger, C3HC4 type (RING finger) 268 310 - -
Lal18g0283 328 MobiDBLite consensus disorder prediction 62 78 - -
Lal18g0283 328 MobiDBLite consensus disorder prediction 31 60 - -
Lal18g0283 328 ProSiteProfiles Zinc finger C3H1-type profile. 192 220 IPR000571 GO:0046872
Lal18g0283 328 Gene3D - 190 224 - -
Lal18g0283 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 326 IPR013083 -
Lal18g0283 328 PANTHER ZINC FINGER PROTEIN 183 10 327 IPR039971 -
Lal18g0283 328 MobiDBLite consensus disorder prediction 1 113 - -
Lal18g0283 328 ProSitePatterns Zinc finger RING-type signature. 284 293 IPR017907 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0283 10 328 C2H2 Transcription Factor Family AT1G01350 68.652 2.71e-163 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal18g0283 zf-C3HC4_3 8.8e-09 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0283 K13127 - gmx:100787434 572.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0283 18 2327302 2331266 Lal18g0283 18 2327302 2331266 ECH