Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0259 ATGACTTGTTTCCCATGTTTTTCCTCTGATAAGAGTAAGAAAAGCAATAGCTTCAACAAGGATCAAGGACCACAAGAAAACGTTATAACAAGAACACCAGTTGATATAAAGAAACCAAATAATGATCCAATCCAAGTTGACCCTTCAAATATTCAAGCACAAAATTTCACATTCCGTGAGCTAGCAACAGCAACAAAGAATTTCCGCCAGGAATGCCTGATGGGTGAAGGTGGCTTTGGCCGAGTTTACAAGGGTTCGATTCCTGCGACCGGACAGGTGGTAGCTGTAAAGCAACTAGACCGAAATGGAATGCAAGGAGGAAGCAAAGAATTTCTTGTTGAGGTTTTGATGTTAAGTCTCTTGCACCATGAGAATTTGGTGAAACTAGTTGGTTATTGTGCTGATGGAGATCAACGTCTTTTGGTGTATGAATTCATGCATGGTGGCTCTCTTGAACACCGTCTTTTTGATTATGGACAAGATGAAGCACCATTGGATTGGTATAGTAGAATGAAAGTGGCATCTAGTGCTGCAAAAGGACTATGGTACTTACATGATAGGGCCAATCCACCAGTTATATACAGGGACTTGAAATCTTCCAACATCTTGCTTGATAATGAATATAATGCAAAACTATCTGATTATGGATTAGCCAAACTTGCAGGTAAAGATAAGATGAATATTGTGCCTACAAGGGTTATGGGTACCTATGGTTATAGTGCTCCTGAGTATGTCAGAACAGGTAACCTCACTTTGAAATCAGATGTGTACAGTTTTGGAGTTGTATTGCTAGAACTTATAACCGGAAGAAAAGCTATTGATACCACAAGACCTAATGCTGAGCAAAATCTTGTTTCATGGGCACAACCTATATTTAGGGAACCAAAAAGATATGGAGATATTGCAGATCCACTTCTGAATAAAAGTTACCCTGAGAAGGATCTAAATCAACTTGTTGCAATAACAGCAATGTGCTTACAAGAAGAATCAGCAGCAAGACCTTTGATGAGTGATGTTGTAACTGCTCTAAGCTTTCTTTCAACTTCTCCTCCAGAGGAAGGTGCTGTTTATGATCCTTAA 1080 0.3935 MTCFPCFSSDKSKKSNSFNKDQGPQENVITRTPVDIKKPNNDPIQVDPSNIQAQNFTFRELATATKNFRQECLMGEGGFGRVYKGSIPATGQVVAVKQLDRNGMQGGSKEFLVEVLMLSLLHHENLVKLVGYCADGDQRLLVYEFMHGGSLEHRLFDYGQDEAPLDWYSRMKVASSAAKGLWYLHDRANPPVIYRDLKSSNILLDNEYNAKLSDYGLAKLAGKDKMNIVPTRVMGTYGYSAPEYVRTGNLTLKSDVYSFGVVLLELITGRKAIDTTRPNAEQNLVSWAQPIFREPKRYGDIADPLLNKSYPEKDLNQLVAITAMCLQEESAARPLMSDVVTALSFLSTSPPEEGAVYDP 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0259 359 Gene3D Transferase(Phosphotransferase) domain 1 146 353 - -
Lal18g0259 359 PIRSF ILK 20 354 - -
Lal18g0259 359 Gene3D Phosphorylase Kinase; domain 1 38 145 - -
Lal18g0259 359 SMART serkin_6 68 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal18g0259 359 SUPERFAMILY Protein kinase-like (PK-like) 42 347 IPR011009 -
Lal18g0259 359 CDD STKc_IRAK 74 343 - -
Lal18g0259 359 Pfam Protein kinase domain 70 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal18g0259 359 ProSiteProfiles Protein kinase domain profile. 68 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal18g0259 359 MobiDBLite consensus disorder prediction 1 26 - -
Lal18g0259 359 PANTHER OS07G0668900 PROTEIN 1 352 - -
Lal18g0259 359 PANTHER RECEPTOR KINASE-LIKE PROTEIN 1 352 - -
Lal18g0259 359 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0259 Lal-Chr18 2162201 2164820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0259 1 359 Glycoside Hydrolase AT3G07070 63.243 8.41e-164 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Lal18g0259 Pkinase 5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0259 - - gmx:100807682 574.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g1572 3 21480062 21483150 Lal18g0259 18 2162201 2164820 LSH