Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0244 ATGTTGAAGCTCCATAGAATGTTGGCTTCTTCTAGGTCTAGCTTCTCTCTCTCAAAAGCTATCTCATTTAACAAACCCACTCTCAAACATCATTATTCTACCTCGTCACCTGCCAAAGGATATAATAATTCAGGTCGAATACTTGCTCCATACTCTGTTTACAAGGGAAAAGCTGCTTTCTCTTTAACTCCTGCTCTTCCAACTTTCACTAAGTTACATTCTGGTTCTCTCGTTGTTGATCGTCGTGGTTCAATAATGGTGACTTTCATGCATGCTATTGGGGAACGTAAATATAACTGGGAGAATAGACAGATATTTGCTCTCTCTGCAACTGAAATTGGCTCTTTGATAACCATGGGCCCTCAAGATTCATGTGAATTCTTTCATGACCCCTCAATGAAATCAAGTAATGCTGGACAAGTAAGGAAGAGTCTATCTATTAAGCCTCATGCAAACAGCAATGGCTACTTCATGAATTTGACTGTTGTCAACAACCAATTAAACACTAAGGAATTCTTTAGTGTTCCTGTAACAGCTGCTGAGTTTGCTGTGATGAAGACAGCTTGCAGTTTTGCATTGCCACACATCATGGGCTGGGACAAAATGACTCATCAGCAGTCCACAGGCGGCGGAACCGTTGGTCTTCAACCAAAGGTGGTGGAGCGACAAGATTTTGAATCTGAATGGGACAAGTGA 696 0.4152 MLKLHRMLASSRSSFSLSKAISFNKPTLKHHYSTSSPAKGYNNSGRILAPYSVYKGKAAFSLTPALPTFTKLHSGSLVVDRRGSIMVTFMHAIGERKYNWENRQIFALSATEIGSLITMGPQDSCEFFHDPSMKSSNAGQVRKSLSIKPHANSNGYFMNLTVVNNQLNTKEFFSVPVTAAEFAVMKTACSFALPHIMGWDKMTHQQSTGGGTVGLQPKVVERQDFESEWDK 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0244 231 Gene3D Transcriptional Coactivator Pc4; Chain A 38 208 IPR009044 GO:0003677|GO:0006355
Lal18g0244 231 SUPERFAMILY ssDNA-binding transcriptional regulator domain 44 207 IPR009044 GO:0003677|GO:0006355
Lal18g0244 231 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 11 231 IPR013742 GO:0003697|GO:0006355|GO:0006952
Lal18g0244 231 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 11 231 - -
Lal18g0244 231 Pfam Whirly transcription factor 53 187 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0244 Lal-Chr18 2037658 2040323 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0244 1 231 Whirly Transcription Factor Family AT1G71260 55.833 6.41e-87 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Lal18g0244 Whirly 9.4e-55 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0244 - - var:108343725 290.812