Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0239 ATGGGATTGAAGAAGGGACCTTGGACTCTTGAAGAAGATCATATTTTGATTTCTCATATTCAACTATATGGCCATGGAAATTGGCGTGCTCTTCCTAAACTAGCTGATGGTCTACGATTACTGCAAAATTACCAAGAAGAACAGACAATGAAATCAAGAATTTTTGGCACACGTTTGAGGAAGAAGAGGTTTGAGAAAAGTGAAGTAGTGCACAATAATAATGCAATCTCCATTTCATACCCATTGCAATTAGAGACACTAGCAACAACAACAACTTGTTCTAGTTCAGGGACTCTAATGTCCATGCCACGTGTAACACTGGATCATGCATGCTCAAGTTCTTCTGAAATAATGATTAATGATACTAGTTCAGCAGAAACCATAGGGTATAATCATTTTAGTGAAGAAATGGAATTTTGGTTGCCCAAGACAGTATCAACAACAAAAGTGGCATGGAGAAGTGATGATAGAAGAAAAATGATGATGATATGTAATGCTTCTTCATCTGCAGCTGGAACCTCTAATCCCGATGATGCTGACTTCAATCCTTATCAGGTTCTAGGTGTAAACCCTATTGAGAAATTTGATGCGATCAAGGCAAAGTATGCAAAGAAAAGAAAGGAAGCTGAGATTAGTGGTGACGAAGCAACTGCTTCCAGACTGGAAAAGGCGTATGACAAACTCATGATGGCTCAATTGACTAATCGGAAAAAGGGTGTGACTTTTGGTTCATTCAAGGTTTCAAAGGACATCAAGTATGCCGACAAGCAACCAATTGTACCCTGGGGACCAAGGTTTTCTAAATCAAGCACGAATGATATGCGCATCAACTTGGCAGTAACTGCTGTTTTTACAGCATGGATCCTTGTAAAGCGCAGTGCTGAATATAAACCTTTGCAGTTTTTAGCCTTCGCTGCTGTTTATAGGCTTTTTGAGAAGTTAAAATCTTTTGAATCTCCTGTAGCCAAGAAATATACTGAAGAAGGTGAAGATACAGGAGAAGGGCTGCGCATGGGAAAGAGACTGCTTCGCGCACTGGCCTTGGTTTTTGGATGTGTAGCCTTTACATCTGTGGCATTTACTCTAGTTTTGAACGTAATTGAGTATGCCAGTGGATCCATTCCCGCTATTCTATACAACAGTCAGGAATTGATAATCACCACTTCATCAGCGGTCATGCTTTATATTTTGGCATCTTTTTATAGATAG 1209 0.397 MGLKKGPWTLEEDHILISHIQLYGHGNWRALPKLADGLRLLQNYQEEQTMKSRIFGTRLRKKRFEKSEVVHNNNAISISYPLQLETLATTTTCSSSGTLMSMPRVTLDHACSSSSEIMINDTSSAETIGYNHFSEEMEFWLPKTVSTTKVAWRSDDRRKMMMICNASSSAAGTSNPDDADFNPYQVLGVNPIEKFDAIKAKYAKKRKEAEISGDEATASRLEKAYDKLMMAQLTNRKKGVTFGSFKVSKDIKYADKQPIVPWGPRFSKSSTNDMRINLAVTAVFTAWILVKRSAEYKPLQFLAFAAVYRLFEKLKSFESPVAKKYTEEGEDTGEGLRMGKRLLRALALVFGCVAFTSVAFTLVLNVIEYASGSIPAILYNSQELIITTSSAVMLYILASFYR 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0239 402 PANTHER - 148 402 IPR021788 -
Lal18g0239 402 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 29 IPR017930 -
Lal18g0239 402 Gene3D - 2 65 - -
Lal18g0239 402 CDD SANT 7 33 IPR001005 -
Lal18g0239 402 Pfam Myb-like DNA-binding domain 5 34 IPR001005 -
Lal18g0239 402 ProSiteProfiles Myb-like domain profile. 1 39 IPR001005 -
Lal18g0239 402 Pfam Protein CHAPERONE-LIKE PROTEIN OF POR1-like 202 317 IPR021788 -
Lal18g0239 402 SUPERFAMILY Homeodomain-like 1 34 IPR009057 -
Lal18g0239 402 PANTHER CHLOROPLAST J-LIKE DOMAIN 1 148 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0239 Lal-Chr18 1989377 2000056 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0239 1 39 MYB Transcription Factor Family AT2G31180 71.795 7.34e-13 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lal18g0239 CPP1-like 3.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0239 - - gmx:100814672 391.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0239 18 1989377 2000056 Lal18g0239 18 1989377 2000056 ECH