Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0235 ATGTCATCATCTTTTCCTGTTCTTCGTACTCACATGGAAAACAAGTATATTAAGCCCCCAGATTCTTTTCAGCTTTCGCCTGTGAGAGATCTCACTGGAAATTCTACCTCATTGCAATCTACATTGTCGAATTCCAATGTCAGAAGTGTTGGTCAAATGGACAATGTGTCTTCAGAAATGCATTCAACGTCACCATTCATTTCTCACCCTCGAGAAAGTGATGAAATATCGTGGGGACCAGATCCATTCCAGGACGTTCTTAGTTTTACTGAAAATTTTCCTGTTCAGCATGATCAAGTCGAAAACAGTGCTTGTTACTTAAACGGCGACAATGTCAAAAAAACTGATTTTGGGGAGTGGGTAGATCAGTTAATGTCAATTGACGATTCTCTTCACCCAAATTGGAATCAACTTCTCGGTGATGATAATGTAGCAGAACCAAAACCAAAGGCAACTCAGATTTGCCAGAACCAGCTTATACCATCTGGTGAAGTTAATGGGCTTCCTAATTCAGCATCAACCGCACCACAAACTAAGCCGAGAATGCGATGGACTCCAGAACTTCACGAGGCCTTTGTGGAAGCAGTCCGTCAGCTTGGTGGCAGTGAGAAGGCTACTCCCAAGGGTGTCTTGAATATGATGAGAGTTGAAGGCCTTACCATTTATCATGTAAAAAGCCACCTACAGAAATACAGAACTGCCAGATACAAACCTGAGTCATCATCAGAAGGGACGTCTGAGAAAAAATTGACAACAATTGAAGAAATGAAATGTCTAGACTTGAAAACGAGTAAAGGGATCACTGAAGCATTGCGGTTGCAAATGGACCTCCAGAAGCGGCTTCATGAACAACTTGAGATTCAAAGAAAGCTGCAAATTCAAATTGAAAACCAAGGGAAGCATCTTCAGATGATGTTTGAGAAACAAAGAGAAATAGGGGACAAGGCTAAGGGCCCGTCCTCCTCTTTGGATGAGCCTTCCGCCAACACGGCGTTACCTTCTCCTCAGGAAGACAGTATAGAAGCCCCAAATGACGAACACGACAAACTTGAAAGCAACAGTCCCAAAGCCATACCTGAAGAAAGTTCTCGCTATGAAAACACAAAGCAAATGTTAGAAGAAGCTGAAGTTACCAACAAAAATGGTGCAGTAGATGATCAATTTGAGGCACCGCCGCCCGCAAAACGGGTGAAGAGCCAATGA 1203 0.4298 MSSSFPVLRTHMENKYIKPPDSFQLSPVRDLTGNSTSLQSTLSNSNVRSVGQMDNVSSEMHSTSPFISHPRESDEISWGPDPFQDVLSFTENFPVQHDQVENSACYLNGDNVKKTDFGEWVDQLMSIDDSLHPNWNQLLGDDNVAEPKPKATQICQNQLIPSGEVNGLPNSASTAPQTKPRMRWTPELHEAFVEAVRQLGGSEKATPKGVLNMMRVEGLTIYHVKSHLQKYRTARYKPESSSEGTSEKKLTTIEEMKCLDLKTSKGITEALRLQMDLQKRLHEQLEIQRKLQIQIENQGKHLQMMFEKQREIGDKAKGPSSSLDEPSANTALPSPQEDSIEAPNDEHDKLESNSPKAIPEESSRYENTKQMLEEAEVTNKNGAVDDQFEAPPPAKRVKSQ 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0235 400 MobiDBLite consensus disorder prediction 27 45 - -
Lal18g0235 400 MobiDBLite consensus disorder prediction 18 45 - -
Lal18g0235 400 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 54 400 IPR044848 GO:0003700
Lal18g0235 400 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 3 53 IPR044848 GO:0003700
Lal18g0235 400 Pfam MYB-CC type transfactor, LHEQLE motif 267 311 IPR025756 -
Lal18g0235 400 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 177 236 IPR017930 -
Lal18g0235 400 MobiDBLite consensus disorder prediction 313 400 - -
Lal18g0235 400 MobiDBLite consensus disorder prediction 340 355 - -
Lal18g0235 400 Pfam Myb-like DNA-binding domain 181 232 IPR001005 -
Lal18g0235 400 SUPERFAMILY Homeodomain-like 177 233 IPR009057 -
Lal18g0235 400 Gene3D - 178 237 - -
Lal18g0235 400 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 54 400 - -
Lal18g0235 400 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 3 53 - -
Lal18g0235 400 MobiDBLite consensus disorder prediction 322 337 - -
Lal18g0235 400 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 179 233 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0235 Lal-Chr18 1957189 1961086 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0235 35 335 G2-like Transcription Factor Family AT3G04450 47.152 8.35e-81 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lal18g0235 Myb_DNA-binding 7.4e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0235 - - mtr:MTR_7g115530 501.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0235 18 1957189 1961086 Lal18g0235 18 1957189 1961086 ECH
Lal18g0235 18 1957189 1961086 Lal12g0639 12 4666526 4670125 PCT
Lal18g0235 18 1957189 1961086 Lal13g1051 13 7780574 7786596 PCT
Lal18g0235 18 1957189 1961086 Lal24g0555 24 3914745 3924588 PCT