Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0232 ATGGAGACTCCAGTGAATATTATTGTGGGTTCTCATGTCTGGATTGAAGATTCATCTGTGTGTTGGATTGATGGTAACGTTTCCAAAATCAATGGCCAGGATGCTGAAATTGAAACTACTAATGGAAAAAAGGTTGTTGCTAAGTTACCAAAAATATTCCCCAAAGACATGGAAGCTCCGGCTGGCGGGGTGGATGATATGACGAAGTTGTCCTATTTGCATGAACCCGGAGTCCTTCAAAACTTAAAAATTAGATATGAATTGAATGAAATATATACTTATACTGGAAATATTCTGATTGCAATAAATCCATTCCAAAGATTACCTCATATTTATGATCTGCACATGATGCAACAATACAAGGGAGCACCACTTGGAGAATTAAGCCCTCATGTATTTGCAGTTGCTGATGTTGCATATAGGGCGATGATTCACGAAGGAAAGAGCAATTCAATTCTGGTTAGCGGGGAAAGTGGAGCTGGTAAAACAGAAACTACGAAAATGCTTATGCGATACCTTGCTTTCTTGGGTGGTAGGGCTGTCACCGAAGGCCGAACAGTTGAGCAACAAGTTCTTGAATCAAACCCAGTTCTGGAAGCATTTGGAAATGCTAAAACTGTCAGGAACAACAACTCCAGTCGTTTTGGTAAATTTGTTGAGATCCAATTTGACAAGAGTGGAAGAATCTCAGGAGCAGCCATTCGAACATACCTTCTAGAGAGATCTCGGGTTTGCCAAATTAATGATCCTGAGCGCAACTACCACTGCTTTTATCTTCTTTGTGCTGCTCCACAGGAGGAAATTGAGAAATACAAATTAGGACATCCTAAAACATTTCACTACCTCAACCAGTCAAAATGCTATGAACTGACTGATATAAGTGATTCTCGCGAGTATCTTGCCACCAGGAGAGCTATGGATATTGTCGGAATAAGCCAAAAAGAGCAGGAAGCAATTTTCAGAGTCGTCGCTGCAATTCTTCATATTGGTAATATTGATTTTGCCAAAGGAAAGGAAATTGATTCATCAATTCCGAAAGATGACAAATCCAAGTTCCACCTGAAAACAACTGCTGAGCTACTCATGTGTAATGCTGATGGTTTGTTAGATACATTATGTAAGCGTGTCATGATCACCCCCGAGGAAGTTATAAAACGGAGCCTCGATCCCCAAAGTGCAGCAATCAGCAGAGATGGTTTTGCAAAAATAATTTACTCTAGACTCTTTGATTGGATTCTGAAAATTGATGCCTGGTGCATTAATGTGGTTGTTAAACAGCACGTATTTAAAATGGAACAAGAAGAATATACAAAGGAGCAGATTGATTGGAGCTACATTGAATTTGTTGACAACAAAGATGTTTTGGACCTTATTGAAAAGAAACCTGGAGGAATCATTGCTCTTCTTGATGAAGCTTGCATGTTTCCAAAGTCAACACATGAAACATTTGCGAACAAGCTTTATCAAACATTTAAGAATCACAAGCGCTTTATTAAGCCAAAATTGTCTCGGACAGATTTCACTATTTCTCACTACGCTGGCGAGGTGCTGTACCAGTCTGATCATTTCTTAGATAAAAACAAGGATTATGTGGTTCCTGAACATCAAGATTTATTAGGTTCTTCCAAATGTCCTTTTGTAGCTGGCCTTTTTCCTCCACTTCCAGAAGAAACATCAAAATCTTCAAAGTTTTCTTCAATTGGTTCTCGTTTTAAGCTGCAACTACAACAACTAATGGAGACACTAAACTCTACAGAGCCTCATTACATTAGATGCGTGAAACCAAACCACGTCCTCAAGCCTGCCATTTTTGAGAATGTCAACATTATGCAACAACTTCGCTGTGGTGGTGTTTTGGAGGCAATCAGAATCAGTTGTGCTGGCTATCCTACTCGTAAGCCATTCTTCGAATTTATAAACCGGTTTACTCTCCTTGCCCCAGAGGTCACAGAAGCAGACGAGGATGAGAAGACTGTTTGCAAGAAGATACTGGAAAACATGGGGCTAAAAGGATATCAGATTGGAAAAACAAAAGTATTCCTAAGAGCAGGTCAGATGGCCGAACTAGATGCACGGAGAGCTCAAGTACTTAGTAATGCAGCAAAAACTATCCAACGGCGCATACGAACCCATCATGCTCGTAAACATTATCTTGCATTGCGAAAGAAGACAGTATACGTACAGTCACTGTGGAGAGGAAGACTTGCATGCAAACTTTATGAGAACATGAGAAGGGAGGACGCCGTTGTGAAAATTCAGAAGACCGTACGCAGATATGAAGCTAGGAAAGCTTATAACAAACTCCAAGCATCAGTTCTTGCATTGCAAACAGCTTCAAGGGCAATCGCTTCCTTTAAGGAGTTCATTTTTAGGAAACGGAATAAAGCTTCCATTATTATTCAGGCTCGGTGGCGGTGCCACATAGCTGCTTCATATTATAAGAGGCTCAAGAAAGGTTCAATAGTCACACAATGTCGATGGAGGGGGCGTCTCGCCAGGAGAGAACTTAGGAAGCTGAAAATGGCTGCAAGAGACACTGGTGCACTTAAAGAATTAAAGGACAAGCTTGAAAAACGAGTGGAGGAACTCACTTGGCGTCTCCAACTAGAAAAAAGTTTAAGGACCAACCTAGAAGAATCAAAAGCACAAGAGATATCAAAACTGCAGAATTCACTACAGGAGGTGCAGAGCAAAGCTGATGAAACCAATGCCATGCTTATCAAGGAGCGAGAAAATTCAAAGAAACTTATTGAAGAAACACCTCCTGTTATTAAAGAAACTCAGGTTATTGTTGAAGACACTCAGAAGATTGAATCACTAACAGTAGAAGTTGAGAGCCTAAAGAATTCCCTTGAGTCAGAGAGACATAAATCTGATGACCTTGAGAGGAAATACAATGAAGCTCAGGCTTATGGTGAAGACAGAAGTAAAAAATTAGAAGACACAGAGAAGAAGGTTCGTCAGCTCCAAGAATCATTGACCAGGCTAGAAGAGAAGATTACCAATTTAGAATCAGAGAATCAGGTTCTACGTCAGCAAGCTGTGTCCATGGCACCTACTAAGTTCCTTTCAGGACGCTCAAGATCAATTATGCAGAGAGTTGATAGTGGACATATTGGAGTGGAGGCAAGGATACCTTTGGATATGCATAGCACATCAATGAGCCACAGGGAATCATCCGAAATCGACGATAAACCACAGAGGTCGCTAAATGAGAAACAACAAGAGAACCAAGAGTTGCTCATTAGATGTATAGCACAACCTCTAGGCTTTGCTGGGAATAGACCAATTGCTGCATGTATCATATACAAATGGCTCTTGCATTGGAGATCATTTGAAGTTGAGCGTACTAGCATTTTCGATCGAATAATCCAAACCATTGGGCACGCCATTGAGTCCCAGGACAACAATGATGTCTTGGCTTATTGGTTATCCAACGCTTCTACGCTTCTCTTATTACTCCAGCGAACACTTAAGGCAAGTGGTGCTGCTGGAATGGCTCCTCAACGCCGTCGCTCTTCATCAGGAACTTTGTTTGGGAGGATGACAAATAGTTTCCGTGGAGCTCCACCTGGAGTCAATATTTCCATAATCAATGGTAGCATGAATGGTGGAGTAGATACATTAAGACAAGTTGAAGCCAAATACCCAGCTCTACTTTTCAAACAGCAGCTTACAGCTTATGTGGAAAAGATATACGGAATGATCCGCGATAACTTGAAGAAAGAAATCTCTCCTTTGCTCGGGTTATGCATCCAGGCACCCAGAACATCGAGAGCGAGTTTGGTTAAGGGAGCATCGCGTTCAGTTGCAAGCACTGAAGCCCAGAAAGCTTTGATTGCTCACTGGCAAGGGATAGTTAAGAGCCTTGGGATATTCTTAAAGACTTTAAAAGAAAATCATGTTCCTCCATTTTTGGTTCGAAAGGTGTTCACACAAATTTTTTCTTTCATCAATGTCCAACTTTTCAATAGTCTTCTTTTAAGAAGGGAGTGTTGCTCATTTAGTAATGGAGAATTTGTGAAAGCTGGTTTGGCTGAATTAGAGAATTGGTCTTTCAATGCAACAGATGAGTATGCAGGTTCAGCTTGGGATGAGCTCAAACACATAAGACAGGCTATTGGATTTCTTGTCATACATCAGAAACCAAAGAAAACACTGAATGAAATAAGTCATGACCTATGCCCAGTCCTAAGTATACAGCAGCTATATCGGATTAGCACCATGTACTGGGATGACAAGTATGGCACACATAGTGTGTCCCCTGATGTCATATCCAATATGAGAGTGTTGATGACTGAAGATTCAAATAATGCAGTTAGTAATTCTTTCCTGTTGGATGATGATTCAAGCATTCCTTTTTCTGTGGATGACATATCAAAGTCCATGGAACAAATAGACATCTCTGATGTAGAGCCTCCGGCATTAATTCGCGACAACTTTGGCTTTAGTTTCTTGATGCCAACCTCAGATGGACAGCTTCCATTGCAGCATTGA 4497 0.4087 METPVNIIVGSHVWIEDSSVCWIDGNVSKINGQDAEIETTNGKKVVAKLPKIFPKDMEAPAGGVDDMTKLSYLHEPGVLQNLKIRYELNEIYTYTGNILIAINPFQRLPHIYDLHMMQQYKGAPLGELSPHVFAVADVAYRAMIHEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRAVTEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKSGRISGAAIRTYLLERSRVCQINDPERNYHCFYLLCAAPQEEIEKYKLGHPKTFHYLNQSKCYELTDISDSREYLATRRAMDIVGISQKEQEAIFRVVAAILHIGNIDFAKGKEIDSSIPKDDKSKFHLKTTAELLMCNADGLLDTLCKRVMITPEEVIKRSLDPQSAAISRDGFAKIIYSRLFDWILKIDAWCINVVVKQHVFKMEQEEYTKEQIDWSYIEFVDNKDVLDLIEKKPGGIIALLDEACMFPKSTHETFANKLYQTFKNHKRFIKPKLSRTDFTISHYAGEVLYQSDHFLDKNKDYVVPEHQDLLGSSKCPFVAGLFPPLPEETSKSSKFSSIGSRFKLQLQQLMETLNSTEPHYIRCVKPNHVLKPAIFENVNIMQQLRCGGVLEAIRISCAGYPTRKPFFEFINRFTLLAPEVTEADEDEKTVCKKILENMGLKGYQIGKTKVFLRAGQMAELDARRAQVLSNAAKTIQRRIRTHHARKHYLALRKKTVYVQSLWRGRLACKLYENMRREDAVVKIQKTVRRYEARKAYNKLQASVLALQTASRAIASFKEFIFRKRNKASIIIQARWRCHIAASYYKRLKKGSIVTQCRWRGRLARRELRKLKMAARDTGALKELKDKLEKRVEELTWRLQLEKSLRTNLEESKAQEISKLQNSLQEVQSKADETNAMLIKERENSKKLIEETPPVIKETQVIVEDTQKIESLTVEVESLKNSLESERHKSDDLERKYNEAQAYGEDRSKKLEDTEKKVRQLQESLTRLEEKITNLESENQVLRQQAVSMAPTKFLSGRSRSIMQRVDSGHIGVEARIPLDMHSTSMSHRESSEIDDKPQRSLNEKQQENQELLIRCIAQPLGFAGNRPIAACIIYKWLLHWRSFEVERTSIFDRIIQTIGHAIESQDNNDVLAYWLSNASTLLLLLQRTLKASGAAGMAPQRRRSSSGTLFGRMTNSFRGAPPGVNISIINGSMNGGVDTLRQVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKGASRSVASTEAQKALIAHWQGIVKSLGIFLKTLKENHVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEFVKAGLAELENWSFNATDEYAGSAWDELKHIRQAIGFLVIHQKPKKTLNEISHDLCPVLSIQQLYRISTMYWDDKYGTHSVSPDVISNMRVLMTEDSNNAVSNSFLLDDDSSIPFSVDDISKSMEQIDISDVEPPALIRDNFGFSFLMPTSDGQLPLQH 1498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0232 1498 CDD MyosinXI_CBD 1072 1457 IPR037975 GO:0007015
Lal18g0232 1498 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Lal18g0232 1498 Pfam IQ calmodulin-binding motif 747 765 IPR000048 GO:0005515
Lal18g0232 1498 Pfam IQ calmodulin-binding motif 820 837 IPR000048 GO:0005515
Lal18g0232 1498 Pfam IQ calmodulin-binding motif 795 814 IPR000048 GO:0005515
Lal18g0232 1498 Pfam IQ calmodulin-binding motif 699 717 IPR000048 GO:0005515
Lal18g0232 1498 ProSiteProfiles Myosin motor domain profile. 62 694 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lal18g0232 1498 ProSiteProfiles IQ motif profile. 793 820 IPR000048 GO:0005515
Lal18g0232 1498 ProSiteProfiles IQ motif profile. 697 724 IPR000048 GO:0005515
Lal18g0232 1498 Pfam Myosin head (motor domain) 425 682 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lal18g0232 1498 Pfam Myosin head (motor domain) 64 414 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lal18g0232 1498 ProSiteProfiles IQ motif profile. 745 774 IPR000048 GO:0005515
Lal18g0232 1498 Coils Coil 930 971 - -
Lal18g0232 1498 Coils Coil 878 912 - -
Lal18g0232 1498 PANTHER MYOSIN 6 414 - -
Lal18g0232 1498 PANTHER MYOSIN 424 1488 - -
Lal18g0232 1498 MobiDBLite consensus disorder prediction 1050 1073 - -
Lal18g0232 1498 Gene3D Kinesin motor domain 586 628 IPR036961 -
Lal18g0232 1498 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lal18g0232 1498 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lal18g0232 1498 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lal18g0232 1498 PRINTS Myosin heavy chain signature 444 472 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lal18g0232 1498 PANTHER MYOSIN-9 6 414 - -
Lal18g0232 1498 PANTHER MYOSIN-9 424 1488 - -
Lal18g0232 1498 Pfam Myosin N-terminal SH3-like domain 9 48 IPR004009 GO:0003774|GO:0005524|GO:0016459
Lal18g0232 1498 Gene3D - 795 844 - -
Lal18g0232 1498 Gene3D - 696 746 - -
Lal18g0232 1498 Gene3D - 747 794 - -
Lal18g0232 1498 SMART DIL_2 1309 1416 IPR002710 -
Lal18g0232 1498 Gene3D - 425 585 - -
Lal18g0232 1498 Coils Coil 853 873 - -
Lal18g0232 1498 Coils Coil 979 1013 - -
Lal18g0232 1498 Gene3D - 252 310 - -
Lal18g0232 1498 ProSiteProfiles Dilute domain profile. 1121 1434 IPR002710 -
Lal18g0232 1498 SMART iq_5 696 718 IPR000048 GO:0005515
Lal18g0232 1498 SMART iq_5 719 741 IPR000048 GO:0005515
Lal18g0232 1498 SMART iq_5 815 837 IPR000048 GO:0005515
Lal18g0232 1498 SMART iq_5 792 814 IPR000048 GO:0005515
Lal18g0232 1498 SMART iq_5 744 766 IPR000048 GO:0005515
Lal18g0232 1498 Gene3D - 629 695 - -
Lal18g0232 1498 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 746 IPR027417 -
Lal18g0232 1498 Gene3D Kinesin motor domain 65 251 IPR036961 -
Lal18g0232 1498 ProSiteProfiles IQ motif profile. 816 845 IPR000048 GO:0005515
Lal18g0232 1498 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 746 844 IPR027417 -
Lal18g0232 1498 Pfam DIL domain 1310 1413 IPR002710 -
Lal18g0232 1498 CDD MYSc_Myo11 76 682 IPR036018 -
Lal18g0232 1498 SMART MYSc_2a 57 695 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lal18g0232 1498 MobiDBLite consensus disorder prediction 1054 1072 - -
Lal18g0232 1498 ProSiteProfiles IQ motif profile. 720 748 IPR000048 GO:0005515
Lal18g0232 1498 Gene3D Myosin VI head, motor domain, U50 subdomain 312 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0232 Lal-Chr18 1922471 1933349 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0232 1 1491 Myosins gene family AT1G54560 79.281 0.0 2538
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0232 K10357 - gmx:100816792 2516.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0232 18 1922471 1933349 Lal13g0713 13 4648117 4663871 PCT
Lal18g0232 18 1922471 1933349 Lal24g0806 24 6369744 6393004 PCT