Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0225 ATGGAGGGGTCAGGAGAAAATTGGCCTTCAGATTCTGATTTGGATGTGGATGACTATGTAAACGATTTGTATTTTGATGATGAAGAATTGGGTGATAATGATGAGAGTTATGCCATGACGGGCGAGAATAACAAAAGGAGGAGGCACCAAGAACTTACTGAGAAATTGCTTGCACTTTCAGACACTATCCCTGGCTTGAATAAGAGGATGGATAATACTTCAATTCTGGACAAAGCTAGCAACTATGTGAAACAACTTCAACAACGTGTAAGAGAGTTAGAACAAGTTGAATCCAAGAGTTGTAGCAACAAAGGTACCAGTTCTTCATGTAATGAAGTGAACTCTGATTACTATTATGGACCATATGACAATATTATCCCCGAGGTCAGAGTAAGATTCTTACATAAAGAAGTACTCATCATAGTTCATTGTGAGAAACAAAAGGGCATTATGATCAAAATATTGTCACATCTTGAAAATCTTCATCTCTCAATAGTCAATACCAATGTTTTGCCTTTTGGGAAATCTACTCTTGACATCACTATTATTGCTCAGATGGGGGATGGATACAATATGACAACAGATGAAGTAGTGAAAAGCCTCAGATTAGCGATCCTGACAAAATAG 627 0.3748 MEGSGENWPSDSDLDVDDYVNDLYFDDEELGDNDESYAMTGENNKRRRHQELTEKLLALSDTIPGLNKRMDNTSILDKASNYVKQLQQRVRELEQVESKSCSNKGTSSSCNEVNSDYYYGPYDNIIPEVRVRFLHKEVLIIVHCEKQKGIMIKILSHLENLHLSIVNTNVLPFGKSTLDITIIAQMGDGYNMTTDEVVKSLRLAILTK 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0225 208 Pfam Helix-loop-helix DNA-binding domain 46 87 IPR011598 GO:0046983
Lal18g0225 208 PANTHER PROTEIN, PUTATIVE-RELATED 43 207 - -
Lal18g0225 208 Coils Coil 76 96 - -
Lal18g0225 208 SMART finulus 42 92 IPR011598 GO:0046983
Lal18g0225 208 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 41 96 IPR036638 GO:0046983
Lal18g0225 208 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 36 86 IPR011598 GO:0046983
Lal18g0225 208 PANTHER BHLH TRANSCRIPTION FACTOR 43 207 - -
Lal18g0225 208 Gene3D - 42 106 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0225 Lal-Chr18 1866322 1869335 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0225 45 205 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 42.373 1.25e-32 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal18g0225 HLH 3.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0225 - - gmx:100527052 237.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1232 1 13633492 13639665 Lal18g0225 18 1866322 1869335 LSH
Lal18g0225 18 1866322 1869335 Lal8g0192 8 1283274 1296153 PCT