Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0208 ATGGCACAAATTCTGCTTCATGGAACTCTTCATGTTACCATCTTTGAGGTGGATAGCCTTAAGGCTAGCGGCGGTGGCAATTTGTTTAGCATGTTTATTAAATTGAAGAAATGTAATGATGATTGTGGTGGCGGTGGTCTACTGGATTTAATAAAAATGTTTGGCGGACCAATAGGTCTTGAATTTGATCCGGGATTCATGTGTGTGGAAAAGTACATAGGGAGATTGAGATTAATCAAGAAGGCTGTTGGTATTGGAAGTGGTGTTACTAAACTCTATGCAACCATTGATCTGGAGAAGGCAAGAGTGGGAAGGACTAGAATTATAGAAAATGAAGAAAATAATCCGAGATGGTATGAATCTTTTCACATTTATTGTGGCCACTCGGCTGCAAGCATTATATTCACTGTGAAAGGGAATAATGCTATTGGGGCAACTTTAATTGGAAGAGCATATGTGTCTGTTGAGGATGTCTTGCATGGTGAGGAAATAGATAGATGGGTCGAACTCTTGGACGAGGATAAAAATCCAATAAATGAGGGTTCAAAGATCCATGTGAAGCTTCAATATTTTGACGTCACAAAAGACATCAACTGGGCTCGAGGCATTCGAAGTGCTAAATTTCCGGGAGTTCCCTATACTTTCTTCTCGCAAAGACAAGGGTGCAAGATAACTCTTTACCAAGATGCTCATGTGCCTGATAACTTTGTCCCTACGATACCACTTTCTGGAGGCAAGACTTATGAGCCTCATCGGTGTTGGGAGGATATTTTTGATGCAATCACCAATGCAAAACACTTAATATACATTACCGGTTGGTCTGTGTATACTGAGATTTCCTTGGTAAGGGATTCTAGGAGGCCAAAGCCTGGGGGAGATGTAACACTTGGTGAGCTTCTCAAGAAAAAGGCTAGTGAAGGTGTCAGAGTTTTGATTCTTGTTTGGGATGATAGAACATCAGTCAATGTGTTGAAAAAAGATGGACTGATGGCTACCCATGACGAAGAAACAGCGGAGTTCTTTGATGGCTCTGATGTGAACTGTGTTTTATGCCCCCGCAATCCCGACGATGGTGGTAGCATTGTTCAGGATTTACAAGTCTCTACCATGTTTACTCATCACCAAAAGATTGTGGTTGTGGACAGTGAGTTGCCAAGTGGAGAGTCAGATAGGCGAAGAATTGTTAGTTTTGTTGGGGGTATTGACCTCTGTGATGGAAGATATGATACACCCTTCCACTCACTTTTCCGAACCCTAGACACAGCACACCATGATGATTTTCATCAACCTAACTTTCCCGGTGCTGATATCACGAAGGGTGGTCCTAGGGAACCATGGCATGACATCCACTCCCGGCTTGAAGGACCCATAGCTTGGGATGTTCTGTTTAACTTTGAGCAAAGATGGAGGAAGCAAGGTGGGAAGGATTTACTTGTTTCACTGAGAGAGCTTGAAGATGTCTTCATTCCCCCATCTCCAGTAACATTTCCTGAGGATCGTGACACATGGAATGTTCAATTATTTAGATCTATCGATGGTGGTGCTGCTTTCGGGTTCCCAGATACTCCTGAAGATGCTGCTAGAGCTGGACTGATTAGTGGTAAGGATAATATCATTGATCGCAGTATCCAAGATGCTTATATTAATGCTATTCGGCGTGCGAAGAACTTCATCTATATTGAAAATCAGTATTTCCTTGGAAGCTGCTTTGGCTGGGCTGCCGATGATATTAAGCCTGAAGACATTGGTGCTTTGCATCTAATCCCAAAGGAACTTTCACTTAAGATTGTTAGTAAGATTGAAGCTGGGGAAAGGTTCACTGTGTATGTTGTGGTCCCAATGTGGCCAGAGGGTGTTCCAGAAAGTGCATCAGTTCAGGCAATATTGGACTGGCAAAGGAGAACACTGGAGATGATGTACAAGGATGTAATTCAGGCACTTAGGGCGAAGGGAAGTGACGAAGATCCTAGGAACTATTTGACATTCTTCTGCCTCGGTAACCGTGAAGTGAAGAAACCGGGGGAGTATGAGCCTTCAGAACAACCAGAAGAGGATTCAGATTATCTGAGAGCCCAAGAGGCACGGTGCTTCATGATTTATGTTCATACCAAGATGATGATAGTTGATGATGAATACATAATCGTTGGATCTGCCAACATCAACCAGAGATCAATGGATGGTTCTAGAGACTCTGAGATCGCCATGGGTGCTTATCAGCCCTATCACTTGGCTAATAGGCAACCTGCACGTGGTCAGGTCCACGGTTTCCGCATGTCATTGTGGTATGAGCACCTCGGCATGCTTCATGAGTCCTTCAACTACCCGGAAAGTGAAGAATGTATTAGCAAGGTGAACCACATTGCTGACAAGTATTGGGATCTCTACTCTAGCGAGTCACTTGAGGGTGACCTTCCCGGCCACCTGCTCCGCTATCCTATCGGGGTTTCGAGTGAAGGTGATATCGCAGAGCTGCCAGGATTTGAGTTCTTCCCTGACACCAAGGCTCGCGTTCTAGGCGGCAAAGCTGACTACTTGCCACCAATCCTCACCACATAG 2556 0.4425 MAQILLHGTLHVTIFEVDSLKASGGGNLFSMFIKLKKCNDDCGGGGLLDLIKMFGGPIGLEFDPGFMCVEKYIGRLRLIKKAVGIGSGVTKLYATIDLEKARVGRTRIIENEENNPRWYESFHIYCGHSAASIIFTVKGNNAIGATLIGRAYVSVEDVLHGEEIDRWVELLDEDKNPINEGSKIHVKLQYFDVTKDINWARGIRSAKFPGVPYTFFSQRQGCKITLYQDAHVPDNFVPTIPLSGGKTYEPHRCWEDIFDAITNAKHLIYITGWSVYTEISLVRDSRRPKPGGDVTLGELLKKKASEGVRVLILVWDDRTSVNVLKKDGLMATHDEETAEFFDGSDVNCVLCPRNPDDGGSIVQDLQVSTMFTHHQKIVVVDSELPSGESDRRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFPGADITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDLLVSLRELEDVFIPPSPVTFPEDRDTWNVQLFRSIDGGAAFGFPDTPEDAARAGLISGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSCFGWAADDIKPEDIGALHLIPKELSLKIVSKIEAGERFTVYVVVPMWPEGVPESASVQAILDWQRRTLEMMYKDVIQALRAKGSDEDPRNYLTFFCLGNREVKKPGEYEPSEQPEEDSDYLRAQEARCFMIYVHTKMMIVDDEYIIVGSANINQRSMDGSRDSEIAMGAYQPYHLANRQPARGQVHGFRMSLWYEHLGMLHESFNYPESEECISKVNHIADKYWDLYSSESLEGDLPGHLLRYPIGVSSEGDIAELPGFEFFPDTKARVLGGKADYLPPILTT 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0208 851 CDD PLDc_pPLDalpha_2 535 744 - -
Lal18g0208 851 PANTHER PHOSPHOLIPASE D ALPHA 1 78 851 - -
Lal18g0208 851 PIRSF PLD_plant 1 851 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Lal18g0208 851 Pfam Phospholipase D Active site motif 698 724 IPR001736 GO:0003824
Lal18g0208 851 Pfam Phospholipase D Active site motif 369 407 IPR001736 GO:0003824
Lal18g0208 851 SUPERFAMILY Phospholipase D/nuclease 194 479 - -
Lal18g0208 851 Gene3D Endonuclease Chain A 243 485 - -
Lal18g0208 851 CDD C2_plant_PLD 2 191 - -
Lal18g0208 851 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 697 724 IPR001736 GO:0003824
Lal18g0208 851 SMART pld_4 697 724 IPR001736 GO:0003824
Lal18g0208 851 SMART pld_4 369 407 IPR001736 GO:0003824
Lal18g0208 851 SMART C2_3c 9 167 IPR000008 -
Lal18g0208 851 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 369 407 IPR001736 GO:0003824
Lal18g0208 851 Pfam C2 domain 87 170 IPR000008 -
Lal18g0208 851 PANTHER PHOSPHOLIPASE D 78 851 IPR015679 -
Lal18g0208 851 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 83 193 IPR035892 -
Lal18g0208 851 SUPERFAMILY Phospholipase D/nuclease 498 781 - -
Lal18g0208 851 Pfam Phospholipase D C terminal 770 840 IPR024632 -
Lal18g0208 851 ProSiteProfiles C2 domain profile. 1 168 IPR000008 -
Lal18g0208 851 Gene3D C2 domain 76 201 IPR035892 -
Lal18g0208 851 Gene3D Endonuclease Chain A 528 744 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0208 Lal-Chr18 1730179 1734569 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0208 1 851 Phospholipase D Gene Family (Wang group) AT3G15730 77.022 0.0 1367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0208 K01115 - gmx:100786410 1467.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1246 17 13482662 13486936 Lal18g0208 18 1730179 1734569 ECH
Lal18g0208 18 1730179 1734569 Lal18g0208 18 1730179 1734569 ECH
Lal20g1210 20 16604689 16608969 Lal18g0208 18 1730179 1734569 LSH
Lal1g1258 1 13840645 13844888 Lal18g0208 18 1730179 1734569 LSH
Lal25g0255 25 1742980 1746842 Lal18g0208 18 1730179 1734569 PCT
Lal18g0208 18 1730179 1734569 Lal25g0255 25 1742980 1746842 PCT