Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0207 AATTCAGTTGTAACCAAAATGGTTCACCCAAAGAAATTCAGAGGTGTCAGGCAACGCCATTGGGGCTCATGGGTTGCTGAGATTCGTCACCCATTATTGAAAAGAAGGGTGTGGCTTGGAACATTTGAGACAGCAGAAGAAGCAGCTAGAGCATATGATGAGGCAGCAATTTTAATGAGTGGAAGAAATGCAAAAACAAATTTCCCAATTTCTGATAAACCAAATGAAACTCATCACAAATCTACTACTACTTCATCATCATCATCATCTTCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAAATCATTATCTGCAATTCTAAGTGCAAAGCTTAGAAAATGTTGCAAATCACCATCACCTTCACTCACTTGTCTAAGACTAGACAATGAAAATTCTCACATTGGTGTGTGGCAAAAAAGAGCAGGTTCTCGTTCTGACTCAAATTGGATCATGATGGTTGAATTAGAAAGGAAAAATAATGTAACACTAGAAGGACCTAATTCTCATTATTCAGAATTGCATGTTCAAGAACCTCAAATACAAGAGAAGATAATAAAACCAGATGAAAATAATATTAATAATAATAATAATAATGATGGAGGGTTAGATGAGGAGCAAAAAATTGCATTGCAAATGATAGAAGAACTTCTTAATAGGAATTAA 675 0.3481 NSVVTKMVHPKKFRGVRQRHWGSWVAEIRHPLLKRRVWLGTFETAEEAARAYDEAAILMSGRNAKTNFPISDKPNETHHKSTTTSSSSSSSSSSSSSSSSSSSSKSLSAILSAKLRKCCKSPSPSLTCLRLDNENSHIGVWQKRAGSRSDSNWIMMVELERKNNVTLEGPNSHYSELHVQEPQIQEKIIKPDENNINNNNNNDGGLDEEQKIALQMIEELLNRN 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0207 224 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 7 224 - -
Lal18g0207 224 PRINTS Ethylene responsive element binding protein signature 13 24 IPR001471 GO:0003700|GO:0006355
Lal18g0207 224 PRINTS Ethylene responsive element binding protein signature 35 51 IPR001471 GO:0003700|GO:0006355
Lal18g0207 224 Pfam AP2 domain 12 60 IPR001471 GO:0003700|GO:0006355
Lal18g0207 224 Gene3D AP2/ERF domain 11 71 IPR036955 GO:0003700|GO:0006355
Lal18g0207 224 ProSiteProfiles AP2/ERF domain profile. 12 69 IPR001471 GO:0003700|GO:0006355
Lal18g0207 224 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 7 224 - -
Lal18g0207 224 MobiDBLite consensus disorder prediction 80 104 - -
Lal18g0207 224 MobiDBLite consensus disorder prediction 67 104 - -
Lal18g0207 224 SUPERFAMILY DNA-binding domain 12 71 IPR016177 GO:0003677
Lal18g0207 224 SMART rav1_2 12 75 IPR001471 GO:0003700|GO:0006355
Lal18g0207 224 CDD AP2 11 71 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0207 Lal-Chr18 1713066 1714479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0207 7 224 AP2-EREBP Transcription Factor Family AT1G15360 63.303 6.22e-81 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lal18g0207 AP2 1.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0207 - - gmx:100796962 251.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0207 18 1713066 1714479 Lal18g0207 18 1713066 1714479 ECH
Lal20g1209 20 16585324 16587101 Lal18g0207 18 1713066 1714479 LSH