Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0205 ATGGGTGAATTGAAGGACACAGAAGCTTACGAGGAAGAGCTCATCGATTACGAAGAGGAAGATGAAAAAGCCATTGATTCTTCTAAACCCGCTGCTGAATCTGGCAAAAAGGGTTATGTTGGGATCCATAGTTCCGGATTTAGAGACTTCCTGTTGAAACCGGAGCTCCTTCGAGCCATCGTGGATTCAGGATTCGAGCATCCTTCAGAAGGCAAATCATATATACTTACTGAGGATTCGTCCACTACAATTTTGTTTGATTCTTCAATAGTGCAACATGAATGCATCCCTCAAGCAATTCTAGGAATGGATGTCATTTGCCAAGCAAAATCTGGAATGGGAAAGACCGCGGTGTTTGTTCTTTCAACACTTCAGCAAATTGATCCTGTTGCTGGTCAAGTTGCGGCTCTTGTTCTTTGCCACACAAGAGAACTAGCTTATCAGATTTGCCACGAATTTGAGAGGTTCAGCACATATCTTTCGGATATCAAAGTTGCTGTTTTCTATGGTGGTGTCAACATCAAGGTTCACAAAGATTTGCTCAGAAATGAATGTCCTCATATTGTTGTTGGAACACCTGGGAGGATTCTTGCTTTGGCTAGAGATAAGGACCTTGGTTTGAAGAATGTTAGGCATTTTATACTTGATGAGTGTGACAAGATGCTCGAATCACTTGACATGAGAAGAGATGTGCAAGAGATTTTTAAATTAACTCCCCATGATAAGCAAGTAATGATGTTTTCAGCTACACTCAGCAAAGAGATCCGACCTGTTTGCAAGAAATTTATGCAAGATCCAATGGAAATTTATGTAGATGATGAGGCAAAATTGACTCTTCATGGTCTCGTGCAGCACTACATTAAATTGCAAGAGTCAGAGAAGAATCGTAAGTTGAATGATCTTCTTGATGCTCTGGACTTTAACCAAGTGGTTATCTTTGTCAAAAGTGTCAGCAGAGCAGCAGAATTGAACAAGTTGCTTGTGGAATGCAACTTCCCATCAATCTGCATACATTCTGGAATGTCACAGGAAGAAAGATTGAAACGATACAAGGGCTTCAAAGAAGGGAAGCAGAGGATTCTTGTAGCAACTGATTTAGTAGGAAGGGGGATTGACATAGAACGTGTTAATATAGTCATCAACTATGACATGCCTGATTCTGCTGATACATATCTGCATAGGGTGGGAAGAGCTGGTAGATTTGGCACCAAGGGGCTTGCAATTACTTTTGTTTCTTCTGCGTCTGACTCTGAAGTTCTCAATGAGGTGCAATCAAGGTTTGAGGTTGATATAAAGGAGCTTCCTGAGCAAATTGACACTTCCACATATATGCCCAACTAA 1341 0.4101 MGELKDTEAYEEELIDYEEEDEKAIDSSKPAAESGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEGKSYILTEDSSTTILFDSSIVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVAALVLCHTRELAYQICHEFERFSTYLSDIKVAVFYGGVNIKVHKDLLRNECPHIVVGTPGRILALARDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLQESEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSEVLNEVQSRFEVDIKELPEQIDTSTYMPN 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0205 446 Pfam DEAD/DEAH box helicase 91 255 IPR011545 GO:0003676|GO:0005524
Lal18g0205 446 CDD SF2_C_DEAD 282 411 - -
Lal18g0205 446 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 26 441 - -
Lal18g0205 446 CDD DEADc_DDX39 44 271 - -
Lal18g0205 446 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 96 269 IPR014001 -
Lal18g0205 446 Pfam Helicase conserved C-terminal domain 295 402 IPR001650 -
Lal18g0205 446 Gene3D - 278 446 IPR027417 -
Lal18g0205 446 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 134 419 IPR027417 -
Lal18g0205 446 SMART ultradead3 64 285 IPR014001 -
Lal18g0205 446 Gene3D - 41 277 IPR027417 -
Lal18g0205 446 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN 26 441 - -
Lal18g0205 446 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 297 442 IPR001650 -
Lal18g0205 446 SMART helicmild6 321 402 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0205 Lal-Chr18 1696724 1702643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0205 1 446 Eukaryotic Initiation Factors Gene Family AT5G11200 79.508 0.0 740
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0205 K12812 - gmx:100799082 797.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0205 18 1696724 1702643 Lal18g0205 18 1696724 1702643 ECH