Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0188 ATGAGTGTGGTCGGTTTTGATTTCGGCAATGAAAGCTGCATTGTTGCGGTTGCAAGGCAGAGGGGGATTGATGTTGTGCTCAATGATGAGTCCAAGCGTGAAACACCTGCAATTGTATGCTTTGGTGATAAGCAACGCTTCATTGGCACTGCTGGGGCTGCATCCACTATGATGAACCCCAATAACTCCATCTCACAGATTAAGAGGCTAATTGGTAAACAATTTTCTGATACCGAATTGCAGCGGGATATCAAGTCATTGCCCTTTCATGTCACCGAAGGCCCTGATGGATATCCTTTGATTCATGCGCGCTACTTGGGTGAAGCTAAAGCATTTACCCCAATCCAAGTCTTTGGAATGATGTTGTCGAATCTTAAAGAAATAGCTGAGAAAAATCTCAATGCCGCTGTTGTTGATTGTTGCATTGGAATCCCAATTTATTTTACTGATCTCGAGAGGAGGGCAGTCTTGGATGCTACCACTATTGCTGGCTTGCACCCACTTCACCTGATTCATGAAACTACTGCGACTGCCTTGGCCTATGGGATTTATAAGACAGATCTTCCTGAAAATGATCCGCTAAATGTTGCCTTTGTTGACATTGGACATGCAAGCATGCAAGTGTGCATTGCTGGATTCAAAAAGGGGCAGCTTAAAATACTAGCTCATTCATATGATAGGTCATTGGGAGGTAGAGATTTTGACGAGGTTTTGTTCCATCATTTTGCTGTGAAATTTAAGGAAGAGTACAAGATTGATGTTTTCCAAAATGCCAGGGCTTCTCTAAGGCTCAGGGCTGCCTGTGAGAAGCTGAAGAAGGTTCTTAGTGCAAATCCCGAGGCACCTCTGAACATTGAATGTTTAATGGATGAGAAGGATGTCAGGAGCTTCATCAAGCGTGATGACTTTGAGCAACTAAGTCTTCCAATTTTGGAACGTGTCAAGGGACCTTTGGAGAAGGCACTTGCTGAAGCAGGCCTTACGGTTGAAAATATACACATGGTTGAGGTGGTTGGTTCTGGTTCTCGTGTACCAGCTATAAACAAAATATTGACAGAGTTTTTCGGAAAGGAGCCTAGGCGAACAATGAATGCTAGTGAGTGTGTTGCTAGGGGTTGTGCCTTACAATGTGCAATCCTTAGTCCAACATTTAAAGTACGAGAGTTTCAGGTGAACGAAAGCTTTCCTTTCTCAATTTCTCTCTCATGGAAAGGTTCTGCTTCAGATGCACAAGATAGTGGACCAGATAGTCAGCTAAGTACCGTTGTTTTCCCCAAGGGAAATTCCATACCAAGTATCAAGGCTCTTACATTTTACAGGTCTGGAACATTTTCTGTGGATGTTCAATATGGTGGTGATGTGAGTGGGCTGCAAACACCGACTAAGATCAGCACATATACCATTGGTCCTTTCCAAAGTTTAAAAAGTGAAAGGGCAAAGATTAAGGTTAAAGTTCGTTTGAATCTGCATGGAATTGTATCCCTTGACTCCGCAATTCTCTTGGAAGAGGAAGAAGTTGAAGTTCCAGTTTCCAAAGAATCAGCAGTAGAAAATACCAAGATGGACACTGATGAAGCTCCTGCCAATGCTGCTCCTCCTCCAACCTCTAATGATAGTGATGTTAATATGCAAGATGCAAAGGCTAGTGCTGACACACCCGGGGTTGAAAATGTTACCTCTCAAACGGATTCTGAGACCAAGGTTCAAGCTCCAAAGAAAAAGGTTAAGAAAACAAACATTCCTGTAGCAGAGTTAGTTTATGGAGCAATGTCACATGTGGATGTCCAGAAAGCTGTAGAGAAGGAGTTTGAAATGGCTTTGCAAGATCGTGTGATGGAAGAAACAAAAGACAAGAAAAATGCTGTTGAGGCTTATGTTTATGACATGAGAAACAAGCTTAATGACAAATACGAAGAGTTTGTGACTGCTCCAGAGAAGGAAGGTTTTATTGCCAAACTTCAGGAGGTAGAAGACTGGCTATATGAGGATGGTGAAGATGAAACTAAAGGTGTATATGTTGCCAAACTTGAAGAACTAAAAAAGCAAGGTGATCCAGTTGAAGAGCGTTATAAAGAATATACGGAGAGAGGTACTGTGATTGATCAGTTCGTTTATTGTATTAATAGTTACAGAGAAGCTGCAGTGTCAAATGATCCCAAATTTGATCACATTGACATCAACGAGAAACAGAAGGTTTTAACTGAATGTGTTGAAGCTGAGAATTGGCTTAGGGAGAAGAAGCAGCAGCAGGACTCACTTCCAAAATATGCCAACCCTGTACTCTTGGTAGCTGAAATAAGAAAGAAAGCTGAGGCTGTTGATAGGTTCTGTAAGCCGATTATGACGAAACCCAAGCCAGCCAAACCAGCTACTCCACCAACACCAGCAACCTCACCACCTCAGGGGGATACCAACAGTAATGAGAATTCCGGGGCCACCGGTAGTGAGGTCCCACCAGAGTCTTCTGAACCAATGGAGACTGATAAGTCAGACAACACAGGTTCTGCATAA 2511 0.4277 MSVVGFDFGNESCIVAVARQRGIDVVLNDESKRETPAIVCFGDKQRFIGTAGAASTMMNPNNSISQIKRLIGKQFSDTELQRDIKSLPFHVTEGPDGYPLIHARYLGEAKAFTPIQVFGMMLSNLKEIAEKNLNAAVVDCCIGIPIYFTDLERRAVLDATTIAGLHPLHLIHETTATALAYGIYKTDLPENDPLNVAFVDIGHASMQVCIAGFKKGQLKILAHSYDRSLGGRDFDEVLFHHFAVKFKEEYKIDVFQNARASLRLRAACEKLKKVLSANPEAPLNIECLMDEKDVRSFIKRDDFEQLSLPILERVKGPLEKALAEAGLTVENIHMVEVVGSGSRVPAINKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPFSISLSWKGSASDAQDSGPDSQLSTVVFPKGNSIPSIKALTFYRSGTFSVDVQYGGDVSGLQTPTKISTYTIGPFQSLKSERAKIKVKVRLNLHGIVSLDSAILLEEEEVEVPVSKESAVENTKMDTDEAPANAAPPPTSNDSDVNMQDAKASADTPGVENVTSQTDSETKVQAPKKKVKKTNIPVAELVYGAMSHVDVQKAVEKEFEMALQDRVMEETKDKKNAVEAYVYDMRNKLNDKYEEFVTAPEKEGFIAKLQEVEDWLYEDGEDETKGVYVAKLEELKKQGDPVEERYKEYTERGTVIDQFVYCINSYREAAVSNDPKFDHIDINEKQKVLTECVEAENWLREKKQQQDSLPKYANPVLLVAEIRKKAEAVDRFCKPIMTKPKPAKPATPPTPATSPPQGDTNSNENSGATGSEVPPESSEPMETDKSDNTGSA 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0188 836 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 387 587 IPR029047 -
Lal18g0188 836 MobiDBLite consensus disorder prediction 511 572 - -
Lal18g0188 836 MobiDBLite consensus disorder prediction 530 546 - -
Lal18g0188 836 CDD HSPA4_like_NDB 2 381 - -
Lal18g0188 836 Gene3D - 38 113 - -
Lal18g0188 836 Gene3D - 5 374 - -
Lal18g0188 836 MobiDBLite consensus disorder prediction 785 799 - -
Lal18g0188 836 PANTHER HEAT SHOCK 70 KDA PROTEIN 14 1 835 - -
Lal18g0188 836 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 592 690 IPR029048 -
Lal18g0188 836 Gene3D - 186 360 - -
Lal18g0188 836 PRINTS 70kDa heat shock protein signature 2 15 - -
Lal18g0188 836 PRINTS 70kDa heat shock protein signature 30 42 - -
Lal18g0188 836 PRINTS 70kDa heat shock protein signature 140 160 - -
Lal18g0188 836 PRINTS 70kDa heat shock protein signature 332 348 - -
Lal18g0188 836 PRINTS 70kDa heat shock protein signature 363 383 - -
Lal18g0188 836 SUPERFAMILY Actin-like ATPase domain 1 185 IPR043129 -
Lal18g0188 836 MobiDBLite consensus disorder prediction 777 836 - -
Lal18g0188 836 Coils Coil 676 696 - -
Lal18g0188 836 PANTHER HSC70CB, ISOFORM G-RELATED 1 835 - -
Lal18g0188 836 SUPERFAMILY Actin-like ATPase domain 195 380 IPR043129 -
Lal18g0188 836 MobiDBLite consensus disorder prediction 800 817 - -
Lal18g0188 836 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 384 623 IPR029047 -
Lal18g0188 836 Gene3D Actin; Chain A, domain 4 230 313 - -
Lal18g0188 836 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 707 790 IPR029048 -
Lal18g0188 836 Pfam Hsp70 protein 3 691 IPR013126 GO:0005524|GO:0140662
Lal18g0188 836 Gene3D - 590 700 IPR029048 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0188 Lal-Chr18 1545747 1551351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0188 4 660 Calmodulin-binding Proteins AT3G09440 30.618 2.11e-86 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0188 K09489 - gmx:100778196 1359.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0188 18 1545747 1551351 Lal18g0188 18 1545747 1551351 ECH
Lal20g1191 20 16380667 16386350 Lal18g0188 18 1545747 1551351 LSH
Lal1g1277 1 14145905 14152198 Lal18g0188 18 1545747 1551351 LSH
Lal10g1138 10 18113611 18119072 Lal18g0188 18 1545747 1551351 PCT
Lal8g0237 8 1598276 1603618 Lal18g0188 18 1545747 1551351 PCT
Lal18g0188 18 1545747 1551351 Lal10g1138 10 18113611 18119072 PCT
Lal18g0188 18 1545747 1551351 Lal8g0237 8 1598276 1603618 PCT