Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0187 ATGCCTAAGAAGATTCATAAGAGTCTTCAAAACTACCTCTCCAAGATAAAGAATCATCACTCACAAATCCATATTCCCTCTAAGAAATGGATCCTCTCAACAATAAAGAATCATAGTTCACATATCCATATACCCTCTACAAAATGGATGCTCTCGGGTTGCAAACATTCTAGGACCTCTTCTTTGGTCATAGAAGACAATCCTCATGATCCTTCTTTATCTAGGAAAAATATTGAAAAGAAAGATGCTGAAGCCACCCTAGCAGATATTGATCGTTTTCTCATTGAGAATTTCAAGTCTTTGTACATCAAAGATGATGAAGAAATCCATGATACAAAAAGGGTTCATGATGATGATGACGAAGAAGGCCATAACCGTGACAAAGATTCAAAGCAACGCCCTATCCTATTCGATGAACCACCATCGAATCTTTTCGACTCTAACCGATTCTTCACGAAAGGTGACAAAGGAACATCAAGCTCAACACCCTCAACCACAACCACAACAATATTTGATGATTCATTATCTTCAATTTCTCATCTTGCAAAGGATCAGGATATGGATCAAAATAATTCTAATTGTGTAGTGGTTCTTGCATGTTCCTCAAACCCTTATGACGACTTCCACCAATCCATGCGAGGAATGGTGGAAGCCAGGTTGAGGAACAATGAAGTAGTGGATTGGGATTTCATGGAGCAACTCTTTTTTTATTACATGAACTTGAATGATAAGAAGTCATACAAGTTCATACTCAATGCTTTTGTGGATCTGGTAGCTGTTATGCGACCATATTGGGAGACAAGTGATACAGAATCAAGGACTACAACTGATACCGAATCAAGGACAACTGATATGGAATCAAGGCCACGTAGTGTTCGAACTACTAGGAGTGGCAACTTGGAAGTGTGGAAGAAGAATAAAGAAGTAATGTAA 933 0.3848 MPKKIHKSLQNYLSKIKNHHSQIHIPSKKWILSTIKNHSSHIHIPSTKWMLSGCKHSRTSSLVIEDNPHDPSLSRKNIEKKDAEATLADIDRFLIENFKSLYIKDDEEIHDTKRVHDDDDEEGHNRDKDSKQRPILFDEPPSNLFDSNRFFTKGDKGTSSSTPSTTTTTIFDDSLSSISHLAKDQDMDQNNSNCVVVLACSSNPYDDFHQSMRGMVEARLRNNEVVDWDFMEQLFFYYMNLNDKKSYKFILNAFVDLVAVMRPYWETSDTESRTTTDTESRTTDMESRPRSVRTTRSGNLEVWKKNKEVM 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0187 310 MobiDBLite consensus disorder prediction 268 297 - -
Lal18g0187 310 PANTHER TRANSCRIPTION REPRESSOR OFP14 3 266 - -
Lal18g0187 310 Pfam Transcriptional repressor, ovate 201 259 IPR006458 -
Lal18g0187 310 MobiDBLite consensus disorder prediction 272 291 - -
Lal18g0187 310 ProSiteProfiles OVATE domain profile. 197 260 IPR006458 -
Lal18g0187 310 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 195 259 IPR006458 -
Lal18g0187 310 MobiDBLite consensus disorder prediction 113 135 - -
Lal18g0187 310 MobiDBLite consensus disorder prediction 113 167 - -
Lal18g0187 310 MobiDBLite consensus disorder prediction 145 167 - -
Lal18g0187 310 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 3 266 IPR038933 GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0187 Lal-Chr18 1535802 1538449 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Lal18g0187 Ovate 1.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0187 - - mtr:MTR_4g012060 224.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0187 18 1535802 1538449 Lal18g0187 18 1535802 1538449 ECH
Lal20g1190 20 16372184 16374084 Lal18g0187 18 1535802 1538449 LSH
Lal10g1137 10 18096613 18097575 Lal18g0187 18 1535802 1538449 PCT
Lal8g0238 8 1604840 1605821 Lal18g0187 18 1535802 1538449 PCT
Lal18g0187 18 1535802 1538449 Lal10g1137 10 18096613 18097575 PCT
Lal18g0187 18 1535802 1538449 Lal8g0238 8 1604840 1605821 PCT