Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0174 ATGATGGCTGAGAACCCTAACTGGTGGAATATGAATCCACCATCTTTGAACCCTCCACAGTATTTGCTTGGATCTTCTTCAATTCCTTTTAACTCTTTGACAGAAAATCCAGAACCCCCTCAGCCATGGAGCCAACTTCTTTTCACTGAATTACCTAGAGAAGAAGAAAGAGTGGGATTCAGTCATTTTCAATCAAAAAAGTTTGAAAACTGGGATGACCATATTCTTAATCCATCCACAAGAGATCTTAATGTTGATGTAATAAAGCAAGAGGGTTACCAAAGTGTCAATTTTTATGGACATGAGATTAATGAGGAATTTCATCAAACTTTTGAAGCTGGGTCACCTTGGTCACATATTGTGCAAGTTTCTAATAATTCCCCTGGTTCAAATGTCACTACTTTGAGCAGTAGTAATTTATTGGATTTCACTTATAACAATGCAGATAACACATCTAAGTGTATTAGCAAAGCTACTTCTGTAGCTTGTAAGAAAGCCAAGGGTCAACCATCTTCAAGCCAACCTCCTATTAAGGTGAGAAAGGAGAAGCTTGGTGATAGAGTAACAGCACTTCACCACATAGTTTCCCCATTTGGAAAGACTGATACAGCTTCTGTCCTATTAGAAGCCATTGGATATATCAGATTCCTGCAGGGTCAAATTGAGGCACTCACTTCTCCTTACTTGGGTAATGTATCAGAAAACATTAGGAATCAACACTCAGTGATGAGTGACATTGGCTTAAAAAGAAAGGGAGCCCCAAACCAGGATACAAAAGATAAGGCTAAAGACTTGAGGAGTAGAGGGTTGTGCTTGGTTCCTGTTTCTTGCACCCAACATGTTGGAAGTGAAAATGGAGCTGATTGTTGGTCTGCAAATGGCAGTGGATTTTAA 894 0.3937 MMAENPNWWNMNPPSLNPPQYLLGSSSIPFNSLTENPEPPQPWSQLLFTELPREEERVGFSHFQSKKFENWDDHILNPSTRDLNVDVIKQEGYQSVNFYGHEINEEFHQTFEAGSPWSHIVQVSNNSPGSNVTTLSSSNLLDFTYNNADNTSKCISKATSVACKKAKGQPSSSQPPIKVRKEKLGDRVTALHHIVSPFGKTDTASVLLEAIGYIRFLQGQIEALTSPYLGNVSENIRNQHSVMSDIGLKRKGAPNQDTKDKAKDLRSRGLCLVPVSCTQHVGSENGADCWSANGSGF 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0174 297 PANTHER OS05G0228400 PROTEIN 11 285 - -
Lal18g0174 297 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 178 228 IPR036638 GO:0046983
Lal18g0174 297 Gene3D - 178 241 IPR036638 GO:0046983
Lal18g0174 297 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 168 217 IPR011598 GO:0046983
Lal18g0174 297 CDD bHLH_AtbHLH_like 175 224 IPR045239 -
Lal18g0174 297 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 11 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0174 Lal-Chr18 1428101 1433754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0174 156 280 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 52.800 3.08e-33 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0174 - - gmx:100802121 395.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0174 18 1428101 1433754 Lal18g0174 18 1428101 1433754 ECH
Lal20g1159 20 16062197 16067452 Lal18g0174 18 1428101 1433754 LSH