Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0171 ATGACACACACAACATATTCTTCAGAAACTACTACTACAACCAACAACAACAATAGCACTTCTTCACATTCCAAAAAATTAGAGAATGCGGAAAAGACCAAGCCCAAGAGACCAAGAGATAACAGCAAGCACCCGGTGTACCACGGTGTCCGGAAGCGTAATTGGGGCAAATGGGTGTCCGAAATTCGCGAGCCACGCAAGAAATCGCGAATCTGGCTCGGTACATTCGAGACACCCGAAATGGCTGCTAGAGCACATGATGTTGCTGCTTTAAGCATTAAGGGCCAATCAGCTATTCTTAATTTTCCAGAATTAATTGACATGCTTCCTAGACCTATCACATGCAACCCACGTGACATTCAAGCAGCGGCTACAAAGGCAGCAGGTATGGTTAAATTGGACCCTTTAGTAATGCACAATTTAGAAGGGTCAGAAGAAGAGCTTAGTGAGATAATTGAGCTTCCAAACATTGAAGAAAAGAGCTTTGACTCGGTCAACCCTCGGACCGAGTTTATTTTGGTTGACACGGTGGATAGTTGGATGTATCCCCCAATGAGGTCCGAGGAAACCGAACTCTTCATCACTTTTTCAGATGGGTTATTTGCACAACATAATTTTATTGTAGATAACTCCTTTGAATTTGAGACAGAGATACAAATACCTATGTGGAGTTGA 675 0.4296 MTHTTYSSETTTTTNNNNSTSSHSKKLENAEKTKPKRPRDNSKHPVYHGVRKRNWGKWVSEIREPRKKSRIWLGTFETPEMAARAHDVAALSIKGQSAILNFPELIDMLPRPITCNPRDIQAAATKAAGMVKLDPLVMHNLEGSEEELSEIIELPNIEEKSFDSVNPRTEFILVDTVDSWMYPPMRSEETELFITFSDGLFAQHNFIVDNSFEFETEIQIPMWS 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0171 224 MobiDBLite consensus disorder prediction 1 24 - -
Lal18g0171 224 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 10 186 - -
Lal18g0171 224 Pfam AP2 domain 45 95 IPR001471 GO:0003700|GO:0006355
Lal18g0171 224 Gene3D AP2/ERF domain 46 104 IPR036955 GO:0003700|GO:0006355
Lal18g0171 224 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 10 186 - -
Lal18g0171 224 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
Lal18g0171 224 MobiDBLite consensus disorder prediction 1 49 - -
Lal18g0171 224 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Lal18g0171 224 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
Lal18g0171 224 MobiDBLite consensus disorder prediction 25 47 - -
Lal18g0171 224 CDD AP2 47 105 IPR001471 GO:0003700|GO:0006355
Lal18g0171 224 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Lal18g0171 224 SUPERFAMILY DNA-binding domain 46 104 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0171 Lal-Chr18 1402918 1403592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0171 15 191 AP2-EREBP Transcription Factor Family AT5G11590 53.769 2.79e-62 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal18g0171 AP2 5.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0171 K09286 - lang:109333798 379.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0171 18 1402918 1403592 Lal18g0171 18 1402918 1403592 ECH