Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0167 ATGGAATACTTCGTCGGTGGCTACTTCGGAAACGGAGGTAACCAATTTTCGCCTGAGAAGCCAAAATCCGGCGAGCCTTTTGCCGTCGACGACCTCCTCGACTTCTCCAACGCCGACGCTATTATGTCCGACGGTTTCTTCGACAATGCCACCGGTAACTCCAACGAGTCCTCCACCGTCGCCGCTCCCGTTGACAGCGGTAATTCCACAATTTCCGGCACCATTGTCCCTTGCGCGTTTGCCGGCGATGATTCTCAATTCTCCGGTGGTGAACTCTGTGTTCCGTATGATGATATGGCTGAATTGGAATGGCTCTCAAACTTCGTGGAAGATTCATTCTCGGCTGAAGAAGAGTTAAAAACCCTTCAACTTCTCTCCGGAGGTGCCACCATTTCCTTCACCACCACCGCCACAAAACCAAACACATCAGATTCATCCTCCTCTGATAACGACACATCTCGAAACACACCATTTCTCCACTCGGAAACCCCTCTCCCAGGCAAAGCAAGAAGCAAGCGGTCACGTGCTGCACCAGGCGACTGGTCCACGCGCCTCGTGCACCTCGTGAAGCCACCGAAAATAAAGAAGGAAGTGTTATTAAACTCGAAAGTAGAAAGTTGTGGAAGGAAGTGTTTGCATTGTGGTGCAGATAAAACACCGCAATGGAGAACTGGGCCTATGGGCCCAAAGACATTATGCAATGCGTGTGGTGTGAGGTTCAAGTCAGGGAGGTTGGTGCCTGAATATCGACCAGTGGCAAGTCCAACGTTTGTGTCAACAAAGCATTCAAATTCTCATAGGAAGGTTATGGAATTGAGAAGGCAAAAAGAGGCTCAACGACACCATATGCATCATCAACATCAACATCAACAATTGATTAGTCAAAGTTCTATTTTTGGAGTATCCAACGGTGGAGATGATTACTTGATCAATCATCATCCTCATCATCACAATTATGGGCCAGAGTTTAAAAATGTTATCTAG 984 0.4787 MEYFVGGYFGNGGNQFSPEKPKSGEPFAVDDLLDFSNADAIMSDGFFDNATGNSNESSTVAAPVDSGNSTISGTIVPCAFAGDDSQFSGGELCVPYDDMAELEWLSNFVEDSFSAEEELKTLQLLSGGATISFTTTATKPNTSDSSSSDNDTSRNTPFLHSETPLPGKARSKRSRAAPGDWSTRLVHLVKPPKIKKEVLLNSKVESCGRKCLHCGADKTPQWRTGPMGPKTLCNACGVRFKSGRLVPEYRPVASPTFVSTKHSNSHRKVMELRRQKEAQRHHMHHQHQHQQLISQSSIFGVSNGGDDYLINHHPHHHNYGPEFKNVI 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0167 327 MobiDBLite consensus disorder prediction 135 160 - -
Lal18g0167 327 CDD ZnF_GATA 210 257 IPR000679 GO:0006355|GO:0043565
Lal18g0167 327 PANTHER GATA TRANSCRIPTION FACTOR 2 327 - -
Lal18g0167 327 MobiDBLite consensus disorder prediction 135 180 - -
Lal18g0167 327 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 207 269 - -
Lal18g0167 327 SMART GATA_3 205 255 IPR000679 GO:0006355|GO:0043565
Lal18g0167 327 PIRSF Txn_fac_GATA_plant 14 301 IPR016679 GO:0003677|GO:0005634|GO:0045893
Lal18g0167 327 Pfam GATA zinc finger 211 244 IPR000679 GO:0006355|GO:0043565
Lal18g0167 327 ProSitePatterns GATA-type zinc finger domain. 211 236 IPR000679 GO:0006355|GO:0043565
Lal18g0167 327 Gene3D - 206 292 IPR013088 GO:0006355|GO:0008270
Lal18g0167 327 PANTHER GATA TRANSCRIPTION FACTOR 9 2 327 - -
Lal18g0167 327 ProSiteProfiles GATA-type zinc finger domain profile. 205 241 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0167 Lal-Chr18 1360310 1362620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0167 25 327 C2C2-Gata Transcription Factor Family AT4G32890 44.720 8.53e-76 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lal18g0167 GATA 1.8e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0167 - - gmx:100801234 427.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0167 18 1360310 1362620 Lal18g0167 18 1360310 1362620 ECH
Lal20g1154 20 16012680 16014872 Lal18g0167 18 1360310 1362620 LSH
Lal1g1328 1 15017883 15020558 Lal18g0167 18 1360310 1362620 LSH