Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0163 ATGGGAAAAGCTACAAGATGGTTGAAGGGTTTGTTGGGGATGAAGAAGGAGAAGGACCACAATGATCCCAATTTGGTTTTTGATAACAACAAGAAGGAGAAGAGAAGGTGGAGTTTTGCTAAGCAAGGGAAAGATATTGCACTAGGTCCAAATAATGGTGATGTTCAAGTTTCACCTTCTCATAATAGTGCTTGGCTCAGATCCTATATTGCTGAATCTGAGAATGAGCAGAACAAGCATGCAATTGCTGTTGCAGCTGCCACAGCCGCCGCCGCGGACGCTGCTGTGGCCGCGGCACAAGCGGCCGTGGCAGTTGTCAGACTGACAAGCCATGGGAGAGGCACATTGTTCACTGGGAGCAGAGAGAAATGGGCTGCAGTGAAGATCCAAACTTTTTTCAGAGGCTATTTGGCAAGAAAGGCTCTTAGAGCACTGAAAGGATTGGTTAAGATTCAGGCTCTTGTTAAAGGGTATCTAGTTCGGAAAAGGGCTGCTGCAACTCTTCACAGTATGCAAGCTCTAATAAGAGCTCAGGCTGCGGTTCGATCACAGCGAGCTCGTCGTTCCGTGAGCAAAGATAATAGAATTTTACCCGAAGTTCTTGCAAGAAAATCTGTGGAACGATTCGATGAACCAAGGAGTGAATTCCATAGCAAAAGACTACCTGCATCATATGAAACATCATTGAATGGATTTGATGAAAGCCCGAAAATTGTTGAGATTGATACTTACAAGACTAGATCAAGATCTAGGCATTTCACCTCTACAATGTCGGAATATGGAGAAGATATGCCTTGTCATGCAATATCATCTCCACTTCCTAGTCCTGTCCCCGGTAAAATATCAGTTCCTGAATGCAAACATGTTCAAGATTTTGAATGTTACTTCAATGTCGACGAGTGTAGGTTCGCGACAGCTCATAACACGCCTCGTTTCGCAAGTTTTGTGAGGCCGAACACCCCTGCTACACCGGCCAAGAGTGTTTGTGGAGATGCTTACTTTCGACCTTACTGCAATTCTCCTGGTTACATGGCCAATACTCAATCATTTAATGCAAAACTAAGATCTCACAGTGCTCCAAGGCAAAGACCTGAACCTAAGAAAAGGCTTTCACTCAATGAAATGATGGCAGCAAGAAATAGCATTAGTGGTGTTAAAATGCAAAGGCCATCAGATTTTCAGGCTCAAGAATCATGGAATTTATGA 1206 0.4403 MGKATRWLKGLLGMKKEKDHNDPNLVFDNNKKEKRRWSFAKQGKDIALGPNNGDVQVSPSHNSAWLRSYIAESENEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTLFTGSREKWAAVKIQTFFRGYLARKALRALKGLVKIQALVKGYLVRKRAAATLHSMQALIRAQAAVRSQRARRSVSKDNRILPEVLARKSVERFDEPRSEFHSKRLPASYETSLNGFDESPKIVEIDTYKTRSRSRHFTSTMSEYGEDMPCHAISSPLPSPVPGKISVPECKHVQDFECYFNVDECRFATAHNTPRFASFVRPNTPATPAKSVCGDAYFRPYCNSPGYMANTQSFNAKLRSHSAPRQRPEPKKRLSLNEMMAARNSISGVKMQRPSDFQAQESWNL 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0163 401 SMART iq_5 121 143 IPR000048 GO:0005515
Lal18g0163 401 SMART iq_5 144 165 IPR000048 GO:0005515
Lal18g0163 401 PANTHER PROTEIN IQ-DOMAIN 14-LIKE 1 393 - -
Lal18g0163 401 PANTHER IQ-DOMAIN 5-RELATED 1 393 - -
Lal18g0163 401 ProSiteProfiles IQ motif profile. 122 150 IPR000048 GO:0005515
Lal18g0163 401 ProSiteProfiles IQ motif profile. 146 173 IPR000048 GO:0005515
Lal18g0163 401 Gene3D - 64 148 - -
Lal18g0163 401 ProSiteProfiles IQ motif profile. 170 199 IPR000048 GO:0005515
Lal18g0163 401 Pfam IQ calmodulin-binding motif 124 143 IPR000048 GO:0005515
Lal18g0163 401 Pfam IQ calmodulin-binding motif 149 163 IPR000048 GO:0005515
Lal18g0163 401 Pfam Protein of unknown function (DUF4005) 319 383 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0163 Lal-Chr18 1318471 1321729 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0163 1 387 IQD Protein Family AT3G16490 53.941 6.83e-108 321
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0163 18 1318471 1321729 Lal18g0163 18 1318471 1321729 ECH
Lal1g1337 1 15133165 15136619 Lal18g0163 18 1318471 1321729 LSH
Lal8g0269 8 1808852 1815200 Lal18g0163 18 1318471 1321729 PCT
Lal18g0163 18 1318471 1321729 Lal8g0269 8 1808852 1815200 PCT