LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal18g0163	ATGGGAAAAGCTACAAGATGGTTGAAGGGTTTGTTGGGGATGAAGAAGGAGAAGGACCACAATGATCCCAATTTGGTTTTTGATAACAACAAGAAGGAGAAGAGAAGGTGGAGTTTTGCTAAGCAAGGGAAAGATATTGCACTAGGTCCAAATAATGGTGATGTTCAAGTTTCACCTTCTCATAATAGTGCTTGGCTCAGATCCTATATTGCTGAATCTGAGAATGAGCAGAACAAGCATGCAATTGCTGTTGCAGCTGCCACAGCCGCCGCCGCGGACGCTGCTGTGGCCGCGGCACAAGCGGCCGTGGCAGTTGTCAGACTGACAAGCCATGGGAGAGGCACATTGTTCACTGGGAGCAGAGAGAAATGGGCTGCAGTGAAGATCCAAACTTTTTTCAGAGGCTATTTGGCAAGAAAGGCTCTTAGAGCACTGAAAGGATTGGTTAAGATTCAGGCTCTTGTTAAAGGGTATCTAGTTCGGAAAAGGGCTGCTGCAACTCTTCACAGTATGCAAGCTCTAATAAGAGCTCAGGCTGCGGTTCGATCACAGCGAGCTCGTCGTTCCGTGAGCAAAGATAATAGAATTTTACCCGAAGTTCTTGCAAGAAAATCTGTGGAACGATTCGATGAACCAAGGAGTGAATTCCATAGCAAAAGACTACCTGCATCATATGAAACATCATTGAATGGATTTGATGAAAGCCCGAAAATTGTTGAGATTGATACTTACAAGACTAGATCAAGATCTAGGCATTTCACCTCTACAATGTCGGAATATGGAGAAGATATGCCTTGTCATGCAATATCATCTCCACTTCCTAGTCCTGTCCCCGGTAAAATATCAGTTCCTGAATGCAAACATGTTCAAGATTTTGAATGTTACTTCAATGTCGACGAGTGTAGGTTCGCGACAGCTCATAACACGCCTCGTTTCGCAAGTTTTGTGAGGCCGAACACCCCTGCTACACCGGCCAAGAGTGTTTGTGGAGATGCTTACTTTCGACCTTACTGCAATTCTCCTGGTTACATGGCCAATACTCAATCATTTAATGCAAAACTAAGATCTCACAGTGCTCCAAGGCAAAGACCTGAACCTAAGAAAAGGCTTTCACTCAATGAAATGATGGCAGCAAGAAATAGCATTAGTGGTGTTAAAATGCAAAGGCCATCAGATTTTCAGGCTCAAGAATCATGGAATTTATGA	1206	0.4403	MGKATRWLKGLLGMKKEKDHNDPNLVFDNNKKEKRRWSFAKQGKDIALGPNNGDVQVSPSHNSAWLRSYIAESENEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTLFTGSREKWAAVKIQTFFRGYLARKALRALKGLVKIQALVKGYLVRKRAAATLHSMQALIRAQAAVRSQRARRSVSKDNRILPEVLARKSVERFDEPRSEFHSKRLPASYETSLNGFDESPKIVEIDTYKTRSRSRHFTSTMSEYGEDMPCHAISSPLPSPVPGKISVPECKHVQDFECYFNVDECRFATAHNTPRFASFVRPNTPATPAKSVCGDAYFRPYCNSPGYMANTQSFNAKLRSHSAPRQRPEPKKRLSLNEMMAARNSISGVKMQRPSDFQAQESWNL	401

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lal18g0163	401	SMART	iq_5	121	143	IPR000048	GO:0005515
Lal18g0163	401	SMART	iq_5	144	165	IPR000048	GO:0005515
Lal18g0163	401	PANTHER	PROTEIN IQ-DOMAIN 14-LIKE	1	393	-	-
Lal18g0163	401	PANTHER	IQ-DOMAIN 5-RELATED	1	393	-	-
Lal18g0163	401	ProSiteProfiles	IQ motif profile.	122	150	IPR000048	GO:0005515
Lal18g0163	401	ProSiteProfiles	IQ motif profile.	146	173	IPR000048	GO:0005515
Lal18g0163	401	Gene3D	-	64	148	-	-
Lal18g0163	401	ProSiteProfiles	IQ motif profile.	170	199	IPR000048	GO:0005515
Lal18g0163	401	Pfam	IQ calmodulin-binding motif	124	143	IPR000048	GO:0005515
Lal18g0163	401	Pfam	IQ calmodulin-binding motif	149	163	IPR000048	GO:0005515

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal18g0163	Lal-Chr18	1318471	1321729	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal18g0163	1	387	IQD Protein Family	AT3G16490	53.941	6.83e-108	321

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal18g0163	-		-	gmx:100797686	600.512

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Lal18g0163	18	1318471	1321729	Lal18g0163	18	1318471	1321729	ECH
Lal1g1337	1	15133165	15136619	Lal18g0163	18	1318471	1321729	LSH
Lal8g0269	8	1808852	1815200	Lal18g0163	18	1318471	1321729	PCT
Lal18g0163	18	1318471	1321729	Lal8g0269	8	1808852	1815200	PCT

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