Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0149 ATGAGCCGCTACGACGGCCGCTCCGGCGACCCCACTTCCTACCGTGAACGGCGGAGTGATTCTGGGCTAGGTGCAGCTTCAGGGTATAGTGGATCAGTACACTCTTCATCTAGCAAGACGAATGGCGATGGTGGGTCACCGAGGAAGCTCAACTTGGATGGGTTGCCACATTTTGAGAAAAACTTCTACTCTGAGTCACCGGCAGTAAGGGCAATGACCGATGATGAGGTTGATGAGTATCGGAGGCGGAGAGAAATAACTGTTGAAGGCCGAGATGTCCCAAAACCTGTCAAGACGTTTCATGATGTTGGTTTTCCAGAATATGTAATTCAAGAAATTGAAAAAGCTGGCTTTACCGAACCTACACCCATTCAATCTCAAGGCTGGCCAATGGCTTTGAAGGGGCGTGATCTGATAGGAATTGCAGAAACAGGATCAGGGAAGACACTTGCTTATTTGTTGCCTGCTATAGTGCATGTTAATGCTCAGCCGATTCTAGATCATGGAGATGGACCAATTGTGTTAGTTTTGGCTCCAACTCGTGAACTTGCTGTCCAAATTCAACAAGAGGCTACTAAATTTGGTGAATCATCAAGGATTAAGAGTACATGCATCTATGGTGGGGTTCCAAAGGGACCTCAAGTGCGTGATCTCCAGAAAGGTGTTGAAATTGTAATTGCAACCCCGGGAAGGTTAATTGATATGCTCGAGTCAAATCACACTAACTTGCAGAGGGTCACATACCTTGTATTGGATGAAGCTGATAGAATGTTAGACATGGGTTTTGACCCTCAGATTCGGAAGATTGCCTCTCAGATTCGTCCAGACCGTCAAACTTTGTACTGGAGTGCTACCTGGCCAAAGGAGGTTGAACAATTGTCAAGGAAGTTCCTTTATAACCCATACAAAGTAATTATTGGTTCCGAGGATTTAAAAGCTAACCATGCAATAAAGCAATATGTTGACATTGTTTCTGAAAAGCAGAAATATGATAAATTGGTGAAGTTGCTGGAGGACATCATGGATGGCAGCCGAATACTGATATTCATGGATACGAAGAAAGGATGTGATCAGATAACTAGGCAGCTCCGCATGGATGGATGGCCTGCACTTTCAATTCATGGAGATAAAAGTCAAGCAGAAAGGGATTGGGTGCTCTCAGAATTTAAATCTGGAAAGAGTCCTATTATGACTGCAACAGATGTTGCAGCTCGCGGTTTAGATGTGAAGGATGTGAAGTATGTGGTAAATTATGACTTCCCGGGTTCACTTGAGGACTATGTTCATCGCATTGGGCGGACTGGGAGAGCTGGTGCAAAAGGAACTGCATACACATTCTTTACAGCTGCTAATGCCAGATTTGCAAAGGAACTTATAACCATACTCAAGGAAGCTGGACAGAAAGTGAGTCCCGATTTAGCAGCAATGGGTTGTGGCGCACCACCTCCACTTTCAGGTCATCGAGGCTTCCACGATCGTGGGAGGGGTTATGGCAGTGGCCGTCCATAG 1509 0.4553 MSRYDGRSGDPTSYRERRSDSGLGAASGYSGSVHSSSSKTNGDGGSPRKLNLDGLPHFEKNFYSESPAVRAMTDDEVDEYRRRREITVEGRDVPKPVKTFHDVGFPEYVIQEIEKAGFTEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDHGDGPIVLVLAPTRELAVQIQQEATKFGESSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESNHTNLQRVTYLVLDEADRMLDMGFDPQIRKIASQIRPDRQTLYWSATWPKEVEQLSRKFLYNPYKVIIGSEDLKANHAIKQYVDIVSEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVVNYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILKEAGQKVSPDLAAMGCGAPPPLSGHRGFHDRGRGYGSGRP 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0149 502 MobiDBLite consensus disorder prediction 480 502 - -
Lal18g0149 502 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 33 488 - -
Lal18g0149 502 CDD DEADc_DDX5_DDX17 109 304 - -
Lal18g0149 502 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 332 477 IPR001650 -
Lal18g0149 502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 454 IPR027417 -
Lal18g0149 502 Gene3D - 308 478 IPR027417 -
Lal18g0149 502 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 129 304 IPR014001 -
Lal18g0149 502 SMART helicmild6 357 438 IPR001650 -
Lal18g0149 502 Pfam Helicase conserved C-terminal domain 329 438 IPR001650 -
Lal18g0149 502 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 250 258 IPR000629 -
Lal18g0149 502 CDD SF2_C_DEAD 317 447 - -
Lal18g0149 502 MobiDBLite consensus disorder prediction 25 45 - -
Lal18g0149 502 Pfam DEAD/DEAH box helicase 122 293 IPR011545 GO:0003676|GO:0005524
Lal18g0149 502 MobiDBLite consensus disorder prediction 1 53 - -
Lal18g0149 502 MobiDBLite consensus disorder prediction 488 502 - -
Lal18g0149 502 Gene3D - 71 307 IPR027417 -
Lal18g0149 502 MobiDBLite consensus disorder prediction 1 17 - -
Lal18g0149 502 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 98 126 IPR014014 GO:0003724
Lal18g0149 502 PANTHER LD32873P 33 488 - -
Lal18g0149 502 SMART ultradead3 117 320 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0149 Lal-Chr18 1189215 1194487 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0149 85 458 Eukaryotic Initiation Factors Gene Family AT3G19760 33.867 3.77e-77 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0149 K12823 - gmx:100781619 885.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1360 1 15425187 15433139 Lal18g0149 18 1189215 1194487 LSH