Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0138 ATGGAGCCTCGAATTGGAAACAAGTTCCGTCTTGGTCGAAAAATCGGTAGCGGATCTTTCGGAGAGATCTATCTTGGTACTAATCTTCAGTCAAATGAAGAGGTTGCGATTAAGCTTGAAAGTGTCAAAACCAAGCACCCTCAATTGTTGTATGAATCAAAGCTGTATAAAATACTGCAAGGAGGAACTGGGATCCCAAATTTGAAATGGTTTGGTGTTGAAGGAGAATACAATGCCCTTGTGATGGATTTGCTGGGACCTAGTCTTGAGGATTTATTCAATTTCTGTAGTCGTAAATTGTCCCTCAAAACAGTTCTCATGCTTGCTGATCAGATGATAAATAGAGTTGAATTTGTTCATTCCAAATCATTTTTACACCGCGACATCAAGCCAGACAACTTCCTCATGGGTTTAGGGAGGCGTGCAAATCAAGTGTACATAATTGACTTTGGTCTTGCAAAGAAATACAGAGACACCTCTACACATCAGCATATTCCTTATAGAGAGAATAAGAATTTGACTGGAACTGCTAGGTATGCTAGTATGAATACTCATCTCGGAATTGAGCAAAGCCGTAGGGACGATTTAGAGTCACTTGGATACGTTCTTATGTATTTTTTAAGAGGAAGTCTGCCTTGGCAGGGATTGAAAGCAGGTAATAAGAAGCAGAAGTATGAGAAAATAAGCGAGAAAAAAGTTTCAACTTCTATTGAGTCTCTTTGTCGTGGCTATCCCTCAGAATTTCTATCATACTTCCATTACTGTCGATCACTGAGGTTTGATGATAAACCAGATTATGCTTATTTGAAAAGACTTTTCCGGGACCTTTTCATCCGTGAAGGATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAACAATCTCAAATTGGCACTCCTACTCGTCCTATTGGTTCTGCTGCTGGACCAAGTTCTGGCATACCACCAGCTGTTGCAAATGCTGATGGACAGTCAGGTGGGGAAGATGGCAGGCCGACTGGTTGGCTTTCATCAGATCCTACTCGTAGGAGAAACTCCGGACCTATTGCTAATGATGTACTTTTATCTAGACAAAAAGCCCCACTTATAAATGAATCAACTGTATCTAAAGATGTTATGCTGTCTAGTTCCAATTTCTTCCAGCCAAGTGGATCTACTAGGCGACGAGCTGTCTCTGGCGGCCATGATGCAGTCGTTGGCAGTGAGACTGAGCCCTCTCGTCCTCCCATCATGGATTCAAGTCAGGGAGCACTTCATAAAATCTCTGGTGCCCAAAGAAATTCAACTATCTTGTCATCGGATCACAACCGAGTAGCCTCTGGCAGAAACACATCGAACGTAATGAATTTGGAGACAACTCTTAGAGGTATCGATATTCGAGACCCTTCATTTCAATGA 1407 0.4158 MEPRIGNKFRLGRKIGSGSFGEIYLGTNLQSNEEVAIKLESVKTKHPQLLYESKLYKILQGGTGIPNLKWFGVEGEYNALVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGNKKQKYEKISEKKVSTSIESLCRGYPSEFLSYFHYCRSLRFDDKPDYAYLKRLFRDLFIREGFQFDYVFDWTILKYQQSQIGTPTRPIGSAAGPSSGIPPAVANADGQSGGEDGRPTGWLSSDPTRRRNSGPIANDVLLSRQKAPLINESTVSKDVMLSSSNFFQPSGSTRRRAVSGGHDAVVGSETEPSRPPIMDSSQGALHKISGAQRNSTILSSDHNRVASGRNTSNVMNLETTLRGIDIRDPSFQ 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0138 468 MobiDBLite consensus disorder prediction 304 356 - -
Lal18g0138 468 MobiDBLite consensus disorder prediction 385 416 - -
Lal18g0138 468 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Lal18g0138 468 PANTHER CASEIN KINASE-RELATED 1 450 - -
Lal18g0138 468 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Lal18g0138 468 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal18g0138 468 SMART serkin_6 9 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal18g0138 468 Pfam Protein kinase domain 10 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal18g0138 468 PANTHER CASEIN KINASE 1-LIKE PROTEIN 2 1 450 IPR030509 GO:0004672|GO:0005524
Lal18g0138 468 Gene3D Transferase(Phosphotransferase) domain 1 1 307 - -
Lal18g0138 468 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Lal18g0138 468 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0138 Lal-Chr18 1114694 1120201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0138 8 213 MAP Kinase Kinase Kinase AT3G06030 27.602 2.35e-12 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Lal18g0138 Pkinase 9e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0138 K02218 - gmx:100787808 794.653
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0339 25 2318530 2323179 Lal18g0138 18 1114694 1120201 PCT