Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0134 ATGGACTCGAAAGCACAGTATAATCCTCGCACTGTTGAAGAAGTTTTTAGGGATTTCAAAGGCCGAAGAGCTGGTCTAATCAAAGCTCTCACCATTGAGGAACAGGCACTTGGTTGGTTTAGCCTGCTGGAAACTGAGAATGTTGAATCTACCATAATGGTAATGAAGGTTTTGAAAGCCTCTCACACTGATGAACTTTTTTTGCTTGATCTTGCTGTTGCAGATGTTGAAGAGTTCTACAGTCAATGTGATCCAGAGCTAGTGAAATATCAAATGCTTGATACTTCTAAAACCTCTCTTGGGAGTAAATTTTTCTCTGAAAATAAAGATATTATTACTCTGGTTGTGCAGCTCTTCTTCATTCTTTCAGAGAAGGAGAATTTGTGCTTATATGGCTTTCCTAGTGAGCAGTGGGAAGTAAATTTACCTGCTGAAGAAGTTCCGCCAGAGCTTCCTGAGCCTGTCCTTGGCATTAACTTTGCTAGGGATGGCATGCAAGAAAAAGACTGGTTATCTTTAGTTGCTGTCCACAGTGATGCATGGTTACTTGCTATTGCCTTCTATTTTGGTGCCAGATTTGGGTTTGACAAGGCTGACAGGAAACGCCTGTTCAATATGATTAATGAACTGTCAACAATATATGAAGTTGTTACTGGTGCAGCAAAGAAGCAAGTTAAGGAGAAGTCTTCAGTTTCAAACCACAGCGGCAGCAAATCTAAGTCCAGCTCTAAAACAGTAAATAATGTTTTCATACTCATACCTACTCCTACAAATAAATATATATATGCCATACTTGTTTCTGTGTTGCAGTGCAAAAATCAGCGGGCTCCAGAATCTCAGGCTAGACAGACAAAGGCGTTACCCTTACCATTAAATGACGAGGATGAGGATGATGACGATGATGATCTGGATGATGAAGACGAAGAAGAACACGAAGAGACCTTGTGTGGTGCATGTGGTGAAAATTACGGCACTGATGAATTCTGGATTTGCTGTGACATATGCGAGAAATGGTTCCATGGGAAATGTGTGAAGATCACTCCTGCTAGGGCAGATCATATCAAACAATACAAGTGCCCATCATGCAGTAACAAGAGAGCTCGCCCTTGA 1110 0.4117 MDSKAQYNPRTVEEVFRDFKGRRAGLIKALTIEEQALGWFSLLETENVESTIMVMKVLKASHTDELFLLDLAVADVEEFYSQCDPELVKYQMLDTSKTSLGSKFFSENKDIITLVVQLFFILSEKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDAWLLAIAFYFGARFGFDKADRKRLFNMINELSTIYEVVTGAAKKQVKEKSSVSNHSGSKSKSSSKTVNNVFILIPTPTNKYIYAILVSVLQCKNQRAPESQARQTKALPLPLNDEDEDDDDDDLDDEDEEEHEETLCGACGENYGTDEFWICCDICEKWFHGKCVKITPARADHIKQYKCPSCSNKRARP 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0134 369 CDD PHD_AL_plant 315 365 IPR044104 -
Lal18g0134 369 Pfam PHD-finger 316 365 IPR019787 -
Lal18g0134 369 SMART PHD_3 315 363 IPR001965 -
Lal18g0134 369 PANTHER CPG BINDING PROTEIN 123 369 IPR045104 GO:0006355|GO:0042393
Lal18g0134 369 PANTHER CPG BINDING PROTEIN 3 35 IPR045104 GO:0006355|GO:0042393
Lal18g0134 369 MobiDBLite consensus disorder prediction 279 310 - -
Lal18g0134 369 MobiDBLite consensus disorder prediction 292 310 - -
Lal18g0134 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 306 364 IPR013083 -
Lal18g0134 369 ProSiteProfiles Zinc finger PHD-type profile. 313 365 IPR019787 -
Lal18g0134 369 SUPERFAMILY FYVE/PHD zinc finger 305 366 IPR011011 -
Lal18g0134 369 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 3 35 - -
Lal18g0134 369 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 123 369 - -
Lal18g0134 369 Pfam Alfin 124 219 IPR021998 GO:0006355|GO:0042393
Lal18g0134 369 ProSitePatterns Zinc finger PHD-type signature. 316 362 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0134 Lal-Chr18 1085727 1090731 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0134 5 368 Alfin-like Transcription Factor Family AT3G42790 49.176 2.99e-98 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lal18g0134 Alfin 4.4e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0134 - - gmx:100170700 375.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1047 20 14332126 14339713 Lal18g0134 18 1085727 1090731 LSH
Lal25g0350 25 2374991 2377996 Lal18g0134 18 1085727 1090731 PCT
Lal10g1079 10 17747486 17751145 Lal18g0134 18 1085727 1090731 PCT
Lal8g0296 8 1986896 1990757 Lal18g0134 18 1085727 1090731 PCT
Lal18g0134 18 1085727 1090731 Lal25g0350 25 2374991 2377996 PCT
Lal18g0134 18 1085727 1090731 Lal10g1079 10 17747486 17751145 PCT
Lal18g0134 18 1085727 1090731 Lal8g0296 8 1986896 1990757 PCT