Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0133 ATGTTTTTGGATGCACATTGTGGGGGACTTTCTTCTGAATCTGATGTTCATCAATCATCAATGTCCAAAAGTTTGATCTTGAAAATGAGTATTCTGCCACAACAATATCACAAGACTAAGCCACTGACTTTTCAATTTCAAGACCAAGATTCAGCTTCGAGTCAATTGACCGGTCAATCTTATCCAGAAGGCGGTTCAGCACAATCAGGTCAATTTTCTATACAGTATAGCAATTCCTCTGCTTGTTCAACACTTAGCAACACTTGGGCAAAGACTGTCGATGGTTTCGTCAACTCATCTGTAGGGAGTCAGGATTTTGCCTTCCCTCCTTCACAAATGGGTCACAACCAATTACTTACTAATCATGCCCAGTTAATGGGAATGACTCCTGTCCGAATCCCTCTGCCACTTGATCTTAGTGAGGAACCGATATATGTGAATGCAAAGCAGTACCATGCTATACTGAGACGTCGGCAGTATCGCGCAAAACTCGAGGCACAAAACAAACTCATCAAAGATCGCAAACCATATCTTCATGAGTCCCGCCATCTACATGCATTGAAGAGAGCTAGAGGTTCTGGTGGACGTTTTCTCAATACCAAAAAGCTTCAAGAATCAAAGACTACTTTTGCAGACGATGGTCTAGATGTTTCCGGCTATAATAATACGCGGTTGAATCTGAGTGGAGATATGTCGGAATCTAAACTGCCACAGATAGAAAACTACATAGATGGTGCTTCCACAATCACATGTGCTAATGTCACTAGTGCATCCAGTAGTGATGACATCTTCCAGCAAAAGGGGTCAGACTTCAGATTATTATGTGGTTACCCTTCTCACATCGGAAGGAATATGCAGAGTTACTCGGCTGGTATGGGCGGTGGCGGTGGTCGGAATCAACAGCATCTATCTGTCCTTATGTGA 924 0.4297 MFLDAHCGGLSSESDVHQSSMSKSLILKMSILPQQYHKTKPLTFQFQDQDSASSQLTGQSYPEGGSAQSGQFSIQYSNSSACSTLSNTWAKTVDGFVNSSVGSQDFAFPPSQMGHNQLLTNHAQLMGMTPVRIPLPLDLSEEPIYVNAKQYHAILRRRQYRAKLEAQNKLIKDRKPYLHESRHLHALKRARGSGGRFLNTKKLQESKTTFADDGLDVSGYNNTRLNLSGDMSESKLPQIENYIDGASTITCANVTSASSSDDIFQQKGSDFRLLCGYPSHIGRNMQSYSAGMGGGGGRNQQHLSVLM 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0133 307 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 8 272 IPR001289 GO:0003700|GO:0006355
Lal18g0133 307 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 8 272 - -
Lal18g0133 307 Gene3D - 140 201 - -
Lal18g0133 307 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 142 197 IPR001289 GO:0003700|GO:0006355
Lal18g0133 307 ProSitePatterns NF-YA/HAP2 subunit signature. 145 165 IPR018362 GO:0003677|GO:0016602
Lal18g0133 307 ProSiteProfiles NF-YA/HAP2 family profile. 140 200 IPR001289 GO:0003700|GO:0006355
Lal18g0133 307 PRINTS CCAAT-binding transcription factor subunit B signature 143 165 IPR001289 GO:0003700|GO:0006355
Lal18g0133 307 PRINTS CCAAT-binding transcription factor subunit B signature 174 197 IPR001289 GO:0003700|GO:0006355
Lal18g0133 307 SMART cbf3 139 200 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0133 Lal-Chr18 1079993 1084848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0133 20 215 CCAAT-HAP2 Transcription Factor Family AT1G54160 43.723 6.04e-48 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lal18g0133 CBFB_NFYA 1.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0133 K08064 - gmx:100500765 390.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0133 18 1079993 1084848 Lal18g0133 18 1079993 1084848 ECH