Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0123 ATGGGTAGAATTCCATGTTGTCCCAAAGAGATTGTCAAAGGTGCTTGGTCTACACAAGAAGATGAAACTCTCACTAAATATGTCACCATCCATGGAGAAGGTAAATGGCAGAAGCTTGCCCTAAAAGCAGGTTTAAAGAGATGTGGTAAGAGTTGCAGACAAAGATGGTTGAATTATTTGAAGCCTGGTAACAAGAGAGGTCAAATCTCTTTGGATGAAGAGGATATGATCATAAGACTTCATCGTCTTCTTGGTAACAGATGGGCCTTGATAGCAAAGAGACTACCAGGACGAACAGATAATGAAATCAAGAACTACTGGAATATCAATCTCTCAAAGAAGTTAGAGAAACAACCTACATTATCATCATGGCCAATATCTACATCACTTCAACACAATCACAAATGTTGTGAACAAGTTGAGAAGACAAAACAAACCCATGTAGCACTTGAAACTCCTCTACCTAGGAGAGTTAAGGATGTCCAATGCAATAAAACTAGAGAGAATAAAGGGTATAGTAGCCCTAGTTGCTCAAATAAAAGAGAGGGTAGTAGAAATAGTGATGATGAAGCTACTAATACTCTTAATAATTACCTCATTGATATTGATCAAAACAAAGAGCTTATAGAAGATGATTCTAGCTCAAAGGTCCTAGAAATAGAAGACCAAAAGAGGGTAGGCTTAACTAATAGTCCTACCTCAACTTCACTTGCCAATCAATATCACCTTTTGACAAGTAAATTTGACCCTCTAGAAATATTTTTGGATGTGGAGCTAGAAAGAATTGCTTCCTTTATGGGACATAATGAAGATATTTATTGCAATAGAGAACCACCATGA 840 0.3702 MGRIPCCPKEIVKGAWSTQEDETLTKYVTIHGEGKWQKLALKAGLKRCGKSCRQRWLNYLKPGNKRGQISLDEEDMIIRLHRLLGNRWALIAKRLPGRTDNEIKNYWNINLSKKLEKQPTLSSWPISTSLQHNHKCCEQVEKTKQTHVALETPLPRRVKDVQCNKTRENKGYSSPSCSNKREGSRNSDDEATNTLNNYLIDIDQNKELIEDDSSSKVLEIEDQKRVGLTNSPTSTSLANQYHLLTSKFDPLEIFLDVELERIASFMGHNEDIYCNREPP 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0123 279 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Lal18g0123 279 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 231 - -
Lal18g0123 279 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Lal18g0123 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Lal18g0123 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 60 IPR017930 -
Lal18g0123 279 MobiDBLite consensus disorder prediction 159 192 - -
Lal18g0123 279 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Lal18g0123 279 Pfam Myb-like DNA-binding domain 66 108 IPR001005 -
Lal18g0123 279 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Lal18g0123 279 CDD SANT 15 60 IPR001005 -
Lal18g0123 279 MobiDBLite consensus disorder prediction 167 181 - -
Lal18g0123 279 PANTHER MYB TRANSCRIPTION FACTOR 1 231 - -
Lal18g0123 279 SMART sant 65 113 IPR001005 -
Lal18g0123 279 SMART sant 12 62 IPR001005 -
Lal18g0123 279 CDD SANT 70 111 IPR001005 -
Lal18g0123 279 Gene3D - 12 64 - -
Lal18g0123 279 Gene3D - 70 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0123 Lal-Chr18 976259 977730 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0123 5 118 MYB Transcription Factor Family AT3G13540 63.478 9.67e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal18g0123 Myb_DNA-binding 1.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0123 K09422 - gmx:100101858 313.923
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0123 18 976259 977730 Lal18g0123 18 976259 977730 ECH