Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0120 ATGAACAATTGGTTGGGTTTCTCTCTAACTCCTCACTTGAGGATTGATGAAGATTTTGGGAGAGAAGATGAAGAGCATGGAAGAGGATCCTATCCTGTTATGCCTTTACACTCTGATGGTTCTCTCTGTGTTGCTGATTCCTTTAGGCACCACCACCACCATTCAGCTCCACCTCAAGAATGGAGATATGATAATGGAATAGGTGGAGGGAATTCAAGTGAAGAAGGTCCAAAGCTTGAAGATTTCTTGGGTTGCTACTCAAACTCTTCTATTGCTGAAACAAAAGTCTTTTGCCAACAAAACACAACACAACATGACCAAAACCAAAACAATACTATGGCCTCAACTTTTAGCACCCACAACAATACTGAGATTGAAACTGAGGAGAATAATCTCACAAACCAATCTTCTATGGTCCAATCTTTCCATGCATATAATAATAACCCACATGCATTAATCACCAACAATGGCATGTACAAGTCCTGGTTGTCACAAACTCAATTTTCTGATACAAAACAACCTTCTTCAGTTGAGGCAAAAAATGGGTGTAACTTCCAGTCTCTGAATTTGACTATGAGCCCAACTTTGCAAAATAAGGTGGGTGCAATTTCACCTTTGCAAGTGAATGATGATAGTAGAAAACGTTCCATAGTGAAAACTCAAGCTAGGGAACCAGTGCCTAGAAAATCTATTGATACTTTTGGGCAGAGAACTTCTCAATACCGTGGGGTTACAAGGCATAGATGGACAGGGAGATATGAGGCACATTTGTGGGATAATAGCTGCAGAAAGGAAGGGCAAACAAGGAAAGGAAGGCAGGGTGGTTATGACAAGGAAGAAAAAGCAGCAAGGGCTTATGACTTAGCTGCACTCAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTTTAAGCACTTATGAGAAGGAAATTGAAGAGATGAAGCACATGACCAGGCAAGAATTTGTTGCCAATTTAAGAAGGAAGAGCAGTGGATTTTCAAGAGGGGCTTCTGTCTATAGAGGAGTAACAAGACACCATCAACATGGAAGGTGGCAGGCTCGGATCGGAAGGGTTGCTGGAAACAAGGACTTGTATCTTGGCACATTCAGCACACAAGAAGAAGCTGCTGAAGCCTATGATATAGCAGCAATCAAGTTTAGAGGAACAAGTGCTGTTACCAACTTTGACATAAGCAGGTATGATGTGAAGAGAATTTGCTCAAGTTCTACTCTCATTGCAGGCGACCTTGCAAAACGGTCTCCGAAAGACTCGGCTCCTTCTAAAGTGACTGCAACTGAGGATTTCAATTCGTGTGGTTCATCTACACCTCAACCTCCTCCTCCTTTGGCTATAACCGATGGTGAACACTCCGATGAATTGTCAAACATGGTGTGGAATGCCAACAATGATGATCAAACATTGAATGAAAGTGGAAACACCAACAATATTTCCCAGCCCTCACAACAGATTTCACCAAGCAACAAAAATGTGTTGAACCCTCATAGCCCCAAGTGTTCATTGGGACTACCCAATGAGTTTGGAGTGAGTGGAGCAGATTATGGACATGGATACTTCACCCTTCAAGGACCAAAATGTGATGATGATGATGGAAACAATGAAAATGACAACATGAACAACAACCATGTTGGAAATTTGGGTTTGGTTAATGAAGTTCCTATGTTTGCTTTGTGGAATGAATGA 1704 0.4167 MNNWLGFSLTPHLRIDEDFGREDEEHGRGSYPVMPLHSDGSLCVADSFRHHHHHSAPPQEWRYDNGIGGGNSSEEGPKLEDFLGCYSNSSIAETKVFCQQNTTQHDQNQNNTMASTFSTHNNTEIETEENNLTNQSSMVQSFHAYNNNPHALITNNGMYKSWLSQTQFSDTKQPSSVEAKNGCNFQSLNLTMSPTLQNKVGAISPLQVNDDSRKRSIVKTQAREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQGGYDKEEKAARAYDLAALKYWGPTTHINFPLSTYEKEIEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSPKDSAPSKVTATEDFNSCGSSTPQPPPPLAITDGEHSDELSNMVWNANNDDQTLNESGNTNNISQPSQQISPSNKNVLNPHSPKCSLGLPNEFGVSGADYGHGYFTLQGPKCDDDDGNNENDNMNNNHVGNLGLVNEVPMFALWNE 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0120 567 PRINTS Ethylene responsive element binding protein signature 241 252 IPR001471 GO:0003700|GO:0006355
Lal18g0120 567 PRINTS Ethylene responsive element binding protein signature 379 399 IPR001471 GO:0003700|GO:0006355
Lal18g0120 567 ProSiteProfiles AP2/ERF domain profile. 240 303 IPR001471 GO:0003700|GO:0006355
Lal18g0120 567 SUPERFAMILY DNA-binding domain 239 305 IPR016177 GO:0003677
Lal18g0120 567 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 35 486 - -
Lal18g0120 567 Pfam AP2 domain 240 295 IPR001471 GO:0003700|GO:0006355
Lal18g0120 567 Pfam AP2 domain 338 389 IPR001471 GO:0003700|GO:0006355
Lal18g0120 567 SUPERFAMILY DNA-binding domain 338 399 IPR016177 GO:0003677
Lal18g0120 567 MobiDBLite consensus disorder prediction 418 456 - -
Lal18g0120 567 MobiDBLite consensus disorder prediction 50 73 - -
Lal18g0120 567 MobiDBLite consensus disorder prediction 470 504 - -
Lal18g0120 567 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 35 486 - -
Lal18g0120 567 CDD AP2 338 399 IPR001471 GO:0003700|GO:0006355
Lal18g0120 567 MobiDBLite consensus disorder prediction 426 441 - -
Lal18g0120 567 Gene3D AP2/ERF domain 239 305 IPR036955 GO:0003700|GO:0006355
Lal18g0120 567 Gene3D AP2/ERF domain 339 399 IPR036955 GO:0003700|GO:0006355
Lal18g0120 567 MobiDBLite consensus disorder prediction 470 502 - -
Lal18g0120 567 CDD AP2 239 305 IPR001471 GO:0003700|GO:0006355
Lal18g0120 567 ProSiteProfiles AP2/ERF domain profile. 339 397 IPR001471 GO:0003700|GO:0006355
Lal18g0120 567 SMART rav1_2 240 309 IPR001471 GO:0003700|GO:0006355
Lal18g0120 567 SMART rav1_2 339 403 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0120 Lal-Chr18 958901 962581 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0120 1 426 AP2-EREBP Transcription Factor Family AT1G72570 53.304 4.54e-138 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lal18g0120 AP2 1.2e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0120 K09285 - gmx:100805489 811.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0120 18 958901 962581 Lal18g0120 18 958901 962581 ECH
Lal20g1029 20 13670168 13674989 Lal18g0120 18 958901 962581 LSH
Lal1g1384 1 15882416 15887246 Lal18g0120 18 958901 962581 LSH