Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0115 ATGTCCTCTCAGGATCAAGCCCTAGTATCCCTTCTCTCTCAGATTGCCCTTTCCTTCGATGGCGCCATTTTGGGCTTTGCTTTTGCCTACGCCGCCGTTCGTTCCATTCTCAATTTCACCGCCAACTCCACCGCACTCCGAAAGCTTCGCACCGCACCTTCCCTTTCTGTCTCCGACCTCCGTTCTATCCTCTCCGACGGCTCCGACGAAGACGGAAATTCTGGCGATGGTAAAATAGTAATTGTACGTGGTACCGTTGATGCCAAGTCCGCCGTTGACGGTAGCTGGAAAGCGTTGATGCCAGGCGTTTTGGTTTCTCGCGAGTCTGGTGATAAAGCCGTTGTTATTCAAAGAACTCAAACGTGTATATACAATGAATGGAAGGGCTTATTTGGATGGACTTCTGATCTTCGAGCTATATTTACAAGATCCTGGAGGAAACAAGAGTCCACATCTTTAAGGAAGGTACCTTTTGTTCTCATTGATGTTGGGCGACGACCAAATAGTGGATACGTTGTTGTCAACTTGGATGGATCAAGACATCCTTTACCTCTGACTACAGTTTATCATAAGTTGCAACCTATAAATGCTTCACCTTATACTTTCTTGCAAGCACTTTTTGGCCATGAATATCCGGTTGGACTACTAGATGAAGAGAAAATTCTTCCTTTGGGGAAGGATATCAGTGCTGTTGGCCTTTGCAGTTTCAGAAATGGAATTGCTGAAATTAAGTCATGCAAAGATCTACCATATTTTCTGTCTGACTTGAGTAAAGATCAGATGATTGTAGATCTTTCCTTCAAAACAAAAGTACTGCTTTGGGGTGGTATTGTTCTTGGTTCAATGTCAGTTGGGGTCCTTGGGTATGCAGTTGTGAGGAACTGGAATAAGTGGAAACAGTGGAAACAACAGCGGGAGCTCCAGCAACAAAGGCAAGATGTCAGTGGTGGTTTTGATTATCAATTGGAAGACGAGAATGAAGATGTCCCAGATGGACAATTATGTGTTGTATGCCTGATGAGGAGAAGGCGCTCTGCTTTCATTCCCTGTGGCCATCTTGTATGCTGCCATAGGTGTGCTGTATCAGTTGAACGTGAAGTGGCACCCAAGTGTCCCGTTTGTCGTCAGGAGATTCGTGATTCAGTGCGAATTTTTGAATCTTGA 1164 0.4502 MSSQDQALVSLLSQIALSFDGAILGFAFAYAAVRSILNFTANSTALRKLRTAPSLSVSDLRSILSDGSDEDGNSGDGKIVIVRGTVDAKSAVDGSWKALMPGVLVSRESGDKAVVIQRTQTCIYNEWKGLFGWTSDLRAIFTRSWRKQESTSLRKVPFVLIDVGRRPNSGYVVVNLDGSRHPLPLTTVYHKLQPINASPYTFLQALFGHEYPVGLLDEEKILPLGKDISAVGLCSFRNGIAEIKSCKDLPYFLSDLSKDQMIVDLSFKTKVLLWGGIVLGSMSVGVLGYAVVRNWNKWKQWKQQRELQQQRQDVSGGFDYQLEDENEDVPDGQLCVVCLMRRRRSAFIPCGHLVCCHRCAVSVEREVAPKCPVCRQEIRDSVRIFES 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0115 387 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 387 - -
Lal18g0115 387 SUPERFAMILY RING/U-box 324 380 - -
Lal18g0115 387 ProSiteProfiles Zinc finger RING-type profile. 335 375 IPR001841 -
Lal18g0115 387 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 387 IPR044247 GO:0004842
Lal18g0115 387 Pfam Zinc finger, C3HC4 type (RING finger) 333 380 - -
Lal18g0115 387 Pfam E3 Ubiquitin ligase 139 287 IPR022170 GO:0004842|GO:0006996|GO:0016567
Lal18g0115 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 318 387 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0115 332 384 C3H Transcription Factor Family AT3G06140 39.623 8.11e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0115 K15688 - gmx:100811939 633.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0115 18 922300 930165 Lal18g0115 18 922300 930165 ECH