Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0113 ATGCATTGGAAAAGGCTTATGTTGAAATCCTTAATACTAGGTTGTTTCAAGGCTAAGCACCCATCCTTGGACCAAAACATAGTTTCAAAAAAGACATGTTCAAGGAGAATCTCTCTCTCTGATTTGAGCAATGCTTCAGCAATATCTATAATGAGTGATTTATCCAATTCTCTTATAGGATCAAATCTTCAAATTTTCACATACCAGGAGTTGAAAGATATTACACAAAACTTTAGCAATTCCAACTTACTTGGAGAAGGTGGGTTTGGAAAGGTATATAAAGGCTTCATTGATGATAAACTTAGGCCAAATTTGGAACCTCAGGTTGTAGCAGTTAAAGCCTTAAACTTGGATGGAAAACAAGGCCATAGAGAGTGGTTGACCGAAGTAGTGATTCTGGGGCAGTTGAAGCATCGCCATCTGGTAAACTTAATTGGATACTGCTGTGAAGATGAGTATAGACTTCTTGTTTACCAATACATGGAGAGGGGCAATTTAGAGGAAAAGCTTTTCAAAGGTTATTTAGCAGCCTTACCTTGGTTAACAAGAGTCAAAATAGCAATTGGTGCTGCAAAGGGACTTGCTTTCCTTCATGAAGAAGAGAAACCAGTGATATATAGAGATGTTAAAGCATCAAACATTCTATTAGATTCTGATTACAATGCCAAGCTCTCAGATTTTGGTTTAGCAATAGATGAACCAGAAGAAGATCAAACACATGTTACAACTCGTGTGATGGGAACTCGTGGTTATGCTGCTCCTGAGTATATAAACACAGGTCATTTGACAACAATGAGCGATGTATATAGTTTTGGAGTTGTTCTGTTAGAGCTATTGACAGGAAAGAAATCAGTGGACAAGAAAAGACCCACAAGAGAGAAAGAGTTAGTAGAATGGGCAAGGCCTATGTTAAAGGATTCTCATAAACTTGATAGCATAATGGACCCAAGACTTGAGGGTCAATACTCTTATCAAGGAGCTAAGAAAATAGCATCATTGACTTATCAATGTCTAAGCCAACATGCAAAGTTTAGGCCAACAATGCTAAATGTGGTCAAGACTTTAGAGCCTCTAATGAATTTGACTGATATTCCAATTGGTCACTTTGTTTATGTGGTTCCAAATGAAGGAGTCAATGAAGGCTCACTTAAGTTGAATAATGAAAAAGAAGAAGAAAAGTGTGAGAGAAAAGAGAAGGGTCATCAAAGACAAAGAAAAGGTCATCATAGCCTTAGACATAGGTCACGTGCTGTTTACTCTGACACTGCTCTATATAAGACTCTTGGAACCAGTTTGTACTCTCCGAAACAAGTACCAGAAGTACATGAACCTGAACCAATTTTAGCATGA 1350 0.377 MHWKRLMLKSLILGCFKAKHPSLDQNIVSKKTCSRRISLSDLSNASAISIMSDLSNSLIGSNLQIFTYQELKDITQNFSNSNLLGEGGFGKVYKGFIDDKLRPNLEPQVVAVKALNLDGKQGHREWLTEVVILGQLKHRHLVNLIGYCCEDEYRLLVYQYMERGNLEEKLFKGYLAALPWLTRVKIAIGAAKGLAFLHEEEKPVIYRDVKASNILLDSDYNAKLSDFGLAIDEPEEDQTHVTTRVMGTRGYAAPEYINTGHLTTMSDVYSFGVVLLELLTGKKSVDKKRPTREKELVEWARPMLKDSHKLDSIMDPRLEGQYSYQGAKKIASLTYQCLSQHAKFRPTMLNVVKTLEPLMNLTDIPIGHFVYVVPNEGVNEGSLKLNNEKEEEKCERKEKGHQRQRKGHHSLRHRSRAVYSDTALYKTLGTSLYSPKQVPEVHEPEPILA 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0113 449 SUPERFAMILY Protein kinase-like (PK-like) 53 356 IPR011009 -
Lal18g0113 449 MobiDBLite consensus disorder prediction 388 415 - -
Lal18g0113 449 ProSiteProfiles Protein kinase domain profile. 78 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal18g0113 449 SMART serkin_6 78 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal18g0113 449 ProSitePatterns Protein kinases ATP-binding region signature. 84 113 IPR017441 GO:0005524
Lal18g0113 449 Pfam Protein tyrosine and serine/threonine kinase 81 355 IPR001245 GO:0004672|GO:0006468
Lal18g0113 449 CDD STKc_IRAK 84 358 - -
Lal18g0113 449 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Lal18g0113 449 Gene3D Phosphorylase Kinase; domain 1 49 160 - -
Lal18g0113 449 Gene3D Transferase(Phosphotransferase) domain 1 161 364 - -
Lal18g0113 449 PANTHER BNAA02G16030D PROTEIN 26 411 - -
Lal18g0113 449 PANTHER OS01G0588500 PROTEIN-RELATED 26 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0113 Lal-Chr18 906732 909570 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0113 64 393 Glycoside Hydrolase AT3G07070 47.147 6.90e-99 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lal18g0113 PK_Tyr_Ser-Thr 1.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0113 - - gmx:100790454 661.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1193 19 15348507 15351211 Lal18g0113 18 906732 909570 ECH
Lal17g1494 17 16375334 16382295 Lal18g0113 18 906732 909570 ECH
Lal18g0113 18 906732 909570 Lal18g0113 18 906732 909570 ECH
Lal18g0113 18 906732 909570 Lal4g0184 4 1152221 1154492 ECH
Lal18g0113 18 906732 909570 Lal17g0175 17 1063852 1071060 ECH